| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2620 |
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| Symbol | |
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| ID | 4667427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | - |
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| Start bp | 2871390 |
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| End bp | 2873621 |
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| Gene Length | 2232 bp |
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| Protein Length | 743 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639823823 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_970966 |
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| Protein GI | 120611288 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.116694 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.658047 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTTCA CCAAAGTCCG GTCCCTGCCT GTTCTGGGAA CATCCGACGG TCCTGCCGTG
GAACGACTCC TGCGCGAGCA GCAGACGCTA CTGGACAGTG CCGGCGTGGG TATCGTGTTC
ATCCGGCAGC GGCAGGTGGT CCGCTGCAAT CCCCGATATG CGGAAATATT CGGCTACGCC
TCCACCCGCG AGGCGATCGG GTTGAGCAGC CAGAGCCTCT ACCCCGATTC CGCGGCCTTC
CGCGCCCTCG GGCGGGCGGC CTACCCCACC CTTTCCCTCG GGTTGCCCTA CCGCTGCGAG
TGCCAGATGC GGCGCAAGAA CGGCCGCCTC TTCTGGGCCA GCCTCACGGG CCGCCTCATC
AATCCGCTGG ACACCTCCGA AGGATCGATC TGGATCGTCG ATGACATCGA CGAGCAGCGC
CACGCGCAAA TCCGGCTGCA CGCGGCGATC CGGGAGAAGC AGGCGCTGTT CGACCACGCG
ATGGTGGGCA TCGCATTCGT GCGCAACAAC CGGCTCACCC GCTGCAACCG GCATTTCGAG
CAGATGCTGG GCTACGCGCC GGGCGAGCTG TCCGAAGGAT CGGCCCGCCA GCGGCATTTC
AGCGATGCCG ACTGGGAGGC CATGGAGTGC CACGGCCACG GCGAACCGAA CGGCACGGGC
TTCACCGGCG AGATGGAACT GCTCGCCAAG GACGGCAGCA CGGTCGCCTG CGAGGTGCGC
AGCCAGCCGC TGGACCCGCT CTTTCCCGAA CAGGGCTGCA TCTGCATCGC CATGGACGTG
AGCGAGCAGC GCAAGACGCA GGCGGAACTC GCCCGCATGC ACGCCGAACT GGAGCAGCAG
GTCCAGGAGC GCACGCGCCA GCTCAGCGAA ACCGTCGAGA GCCTGCACCG CGAGATCAAC
GACCGCAAGC ACGACCAGGA ACGCATCTAC TGGCTGGCGC ACTACGACCC GCTCACCGGC
CTGCCCAACC GCACGCTGCT GGCAGAACGC GCCCAGCACG CGATCCGGGT CGCGCAGGAA
AACGGCACGC CCCTGGCGGT GGTCTTTCTC GATCTGGACC ACTTCAAGCA TGTGAACGAT
TCGCTGGGCC ACCGGGTCGG CGACGCGCTG CTGGTGGAGA TCGCCAAGCG CCTGAGGGCC
GTGGTGCGCG ACCGCGACAC GGTTTCCCGG CTGGGCGGCG ACGAATTCAT CCTGCTGCTG
CCAGGCGCCA ATGCCCACGG CGCGGCGCGC GTGGCCACCA AGCTGCAGGA AGCCTCCCGC
CAGCCCTACC AGATCGGCCA CCACGAACTC ACCATGGCGC CCTCGATGGG CATCGCCCTC
TTCCCGGACG ACGGCTGCGA TTTCGACACG CTGACGCAGT CCGCGGACGT GGCCATGTAC
CGCGCCAAGC TCGACGGACG CAACACCTAC CGCTTCTTCA CGCCGGAGAT GCAGGCGCAG
TCCGTGCGCG CCCTGCTGCT GGAAAACGCG CTGCGGCGGG CCCTGGAGCG CGAGCAGCTC
CACCTGCACT ACCAGCCCCA GATCACGATC GCCAGCGGCG AGATCCGCAG CGTGGAGGCC
CTGCTGCGCT GGGACCATCC CGAGCTGGGC CCCATCTCGC CGGCCGAATT CATCCCGATC
GCCGAGGACA GCGGCCAGAT CCTGCAGATC GGCGAATGGG TGCTCCGCAC GGCCCTGGCC
CAGTTGCAGG CCTGGCATGC CATGGGGCTG GAGTGGCTGT CCATGGCAGT CAACCTGTCG
GCCCTGCAGT TCCGGCAGCC ATTGCTGCCG GAACTGGTCA GCCGCATCCT GGAAGAAACC
CGCCTGCATC CCCAGCGGCT GGAGCTGGAG CTGACCGAAG GTGTCGCCGT GGACGATCCG
CGGTCGGCCA TCGCGACCAT GGACCAGCTC CATGCCCGCG GCGTGCGGAT GTCGATGGAC
GACTTCGGGA CCGGCTATTC GTCCCTGAGC CAGCTCAAGC GCTTCCAGAT CTACAAGCTC
AAGATCGACC AGTCCTTCGT GCGCGACCTG GGCGTGGACA GCAACGACCG GGCCATCGTG
AGCGCCATCA TCCGCATGGC CCAGGCCCTG GGCATGCGCA CCACCGCCGA GGGCGTGGAA
ACGGCCGAAC AGCTGGAGTA CCTGCGGCAG CAGGGTTGCG ACGAGGCACA GGGCTACTAC
TTCAGCCGCC CGCAGACCGC GCAGGCCATC ACGCCGCTGC TGCAGCAGCG GACGATACGG
CCCGAAGGTT GA
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| Protein sequence | MPFTKVRSLP VLGTSDGPAV ERLLREQQTL LDSAGVGIVF IRQRQVVRCN PRYAEIFGYA
STREAIGLSS QSLYPDSAAF RALGRAAYPT LSLGLPYRCE CQMRRKNGRL FWASLTGRLI
NPLDTSEGSI WIVDDIDEQR HAQIRLHAAI REKQALFDHA MVGIAFVRNN RLTRCNRHFE
QMLGYAPGEL SEGSARQRHF SDADWEAMEC HGHGEPNGTG FTGEMELLAK DGSTVACEVR
SQPLDPLFPE QGCICIAMDV SEQRKTQAEL ARMHAELEQQ VQERTRQLSE TVESLHREIN
DRKHDQERIY WLAHYDPLTG LPNRTLLAER AQHAIRVAQE NGTPLAVVFL DLDHFKHVND
SLGHRVGDAL LVEIAKRLRA VVRDRDTVSR LGGDEFILLL PGANAHGAAR VATKLQEASR
QPYQIGHHEL TMAPSMGIAL FPDDGCDFDT LTQSADVAMY RAKLDGRNTY RFFTPEMQAQ
SVRALLLENA LRRALEREQL HLHYQPQITI ASGEIRSVEA LLRWDHPELG PISPAEFIPI
AEDSGQILQI GEWVLRTALA QLQAWHAMGL EWLSMAVNLS ALQFRQPLLP ELVSRILEET
RLHPQRLELE LTEGVAVDDP RSAIATMDQL HARGVRMSMD DFGTGYSSLS QLKRFQIYKL
KIDQSFVRDL GVDSNDRAIV SAIIRMAQAL GMRTTAEGVE TAEQLEYLRQ QGCDEAQGYY
FSRPQTAQAI TPLLQQRTIR PEG
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