| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_2519 |
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| Symbol | ligD |
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| ID | 4669152 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | - |
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| Start bp | 2760685 |
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| End bp | 2763504 |
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| Gene Length | 2820 bp |
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| Protein Length | 939 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 639823722 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_970866 |
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| Protein GI | 120611188 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACGAC GCTCCAGGAC CTCCGGCACT GCGCAGGAAG CGCCGCGGAA AGCGCCGCAA
AAGGCGCCAC CGGACGCCCT CGCAGACTAC GCCCGCAAGC GGGACTTCCG CAACACCCCC
GAGCCCGGCG CGGAGCCGGG CGACGCCCTG CCCCGGGGCG CGCTGCGCTT CGTGGTGCAG
AAGCACTGGG CGAGCCGCCT GCACTACGAC TTCCGGCTGG AAATCGACGG CACCATGAAG
AGCTGGGCGG TGCCCAAGGG CCCGAGCTTC GATCCCAGGG ACAAGCGCAT GGCCGTGCAG
GTCGAAGACC ATCCGGTCGC CTACAACCGC TTCGAGGGCC AGATTCCCGC GCGGCAGTAC
GGCGCGGGCC GCGTCATCAT CTGGGACAAG GGCTACTGGG TGCCGCTGGA GGACCCGGCC
CGCGCGTGGC GGGCGGGCAA GCTCAAGTTC GAACTGCACG GCCACAAGCT CCAGGGCCGG
TGGACGCTGG TGCGCATGCA CGGCCGGGGC AACGAGCGCC AGCCGCCGTG GCTGCTCATC
AAGGAGCGCG ACGGCCTGGA GCGCGATGCC GTCGAGTACA GCGTGGTGGA CGCCCTGCCG
GACAGCGTGA AGTCGCTGCC CGACCTGCCT GAGCCCGCGC CCGCGCGGGG CAGGCAAGCC
CCTGCCCCTG CCGCCTCATC CCCCGCCCGC AGGACGGCCG CCCGCGGCAA GGCTGCGGCC
TCGGCCCCCG CGCCGGCCCC GGAGCCGGCG GCAGGCAGGA CTGCTCGGGC CGGAACGTCC
CCGCGCCCGA AGAAGGCGGC CCTGCCCGCG GCGCTGGCGC CGCAACTGGC CACCCTGGTG
GACGGCCCGC CCACCGACCT GGCCGAATGG ATGTTCGAGC TCAAGTTCGA CGGCTACCGC
ATCCTCGCCC GGATCGAAGG CGGCGAGGTG CGCCTCATCA CCCGCAACGG CAACGACTGG
ACCCACCGCA TGCCCGGCCT GGCGCGCGCC GTGCGTGCCC TGCCGGTGGA GTCCGGCTGG
ATCGATGGCG AAATCGTGGT GCCCGACCGG CACGGCATTC CGGATTTCCA GGCGCTGCAG
AACGCCTTCG AGAGCGGGCG CCGGCCCGGA CGCAGCGCGG CGGGCAGCCC GGACGACGGC
GCGGTGGACC GCAGCGGCCT GGTCTTCTAT GTCTTCGATC TGCCCTTCCT CAACGGCCAT
GACCTGCGGG GCCTGCCGCT GGCAGAGCGC AGGCAGGCGT TGCGCACGCT CGTGGCCGAG
GCCGGCAGCG ATACGGTGCG CTTCAGCGAC GCGTTCGAGG CATCGCCCGG CGAGCTGATC
GCCTCGGCTT GCCGGCTCGG CTTCGAGGGC GTGATCGGCA AGCGCGTGTC GTCGGCCTAC
GGGTCCGGCC GGTCGGCCGA CTGGATCAAG CTCAAGTGCG GGCAGCGGCA GGAGTTCGTG
ATCGGTGGCT ATACCGACCC GCAGGGCACG CGCACCGGCC TCGGCTCGCT GCTGCTGGGC
GTGCATGGCG ACGACGGGCA GTTGCACTAT GCCGGCAACG TGGGCTCCGG CTTCAGCGAG
CGCACCTTGA CGACGCTGCT CGGGCTGCTG CGCTCACTCG CCGCAGACCG CAGTCCCTTC
GCCGAAGGCA CGCAGGTGGG CCGCAAGGCG CACTGGGTCA AGCCGCAACT GCTCGCGGAG
GTGGCCTTCG CGGGCTGGAC GCAGACGCGC CATGTCCGCC AGGCGGTGTT TCGCGGCCTG
CGCGAGGACA AGCCCCCGCG CGAGATCGTG CGCGAGACGC CCGCACCGGC CGCCACGGTG
GCGGGCCCGT CCCCCACCCC GCCGGCCGCT CCACGCCCGG CTTCATCCGA AGCCACGCCC
TCCAGGGCCC GCTCCACCAT GACCTCCCGC AGAACCGCAT CCGCCCCCTC GCCCGCCTCC
CCGCCCTCTT CGCTGCGCGT GACCCACGGC GACCGCGTGA TCGATGCCGC GAGCGGAACC
ACCAAGCTGG ACCTGGTGCG CTACTACGCG CTGGTCGCGC CCCTGATGAT GGAACACCTG
CGCCAGCGCC CCGTCTCGGT CGTGCGGGCT CCGGAAGGCG TGGGCGGGGA GCTCTTCTTC
CAGAAGCATC CGGAGCACGG ATCGGTGGAC GGCGTGCGGA CGCTGGACCC GGCGCTGGAC
CCCGGCCATC CGCCCCTGGC CGAGATCGCG GGGCCGGAAG GCCTGCCGGC CTGGGCCCAG
ATGAACACCA TCGAGTTCCA CAGCTGGAAC GCCCGCAGCG ACCGCATCGA CCGGCCCGAC
CGGATGGCCT TCGACCTCGA CCCCGGCGAA GGCGTGCCCT GGGACAAGGT GCAGGAGGCC
ACCACGCTGA TGCGCGTGAT GCTCACGGAG CTGGGCCTGC CGGGCTTTCT CAAGACCAGC
GGGGGCAAGG GGCTGCACGT GGTCGTGCCC ATCAAGCGCC TGTACGGCTG GGATGCGGTG
AAGGGCTTTT CCCAGGCGGT GGTGCAGCAC ATGGCGCGCA CGATCCCGCA GCTGTTCGTG
GCCAAGAGCG GGCCGCGCAA CCGCGTGGGA AAAATCTTCG TGGACTACCT GCGCAACGGC
TTCGGCGCCA CCACGGTGAG CGCATGGTCC GCCCGGGCAC GACCCGGCCT GGGCATTTCC
GTGCCGCTGC GCTGGGATGA ACTGGGAGCG CTCTCGAGCA GCACCGAATG GACCGTGGCC
ACGGTGGAAG ACCGGCTGCG CGAAGGCAAC GCGCCCTGGG ACGGCTACGC CAAGGCGGCG
GTCTCCATCA CGCAGGCCAT GAAGATGCTC GGGTACGAAC CGCCGCGCGG CGGGCGGTGA
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| Protein sequence | MARRSRTSGT AQEAPRKAPQ KAPPDALADY ARKRDFRNTP EPGAEPGDAL PRGALRFVVQ
KHWASRLHYD FRLEIDGTMK SWAVPKGPSF DPRDKRMAVQ VEDHPVAYNR FEGQIPARQY
GAGRVIIWDK GYWVPLEDPA RAWRAGKLKF ELHGHKLQGR WTLVRMHGRG NERQPPWLLI
KERDGLERDA VEYSVVDALP DSVKSLPDLP EPAPARGRQA PAPAASSPAR RTAARGKAAA
SAPAPAPEPA AGRTARAGTS PRPKKAALPA ALAPQLATLV DGPPTDLAEW MFELKFDGYR
ILARIEGGEV RLITRNGNDW THRMPGLARA VRALPVESGW IDGEIVVPDR HGIPDFQALQ
NAFESGRRPG RSAAGSPDDG AVDRSGLVFY VFDLPFLNGH DLRGLPLAER RQALRTLVAE
AGSDTVRFSD AFEASPGELI ASACRLGFEG VIGKRVSSAY GSGRSADWIK LKCGQRQEFV
IGGYTDPQGT RTGLGSLLLG VHGDDGQLHY AGNVGSGFSE RTLTTLLGLL RSLAADRSPF
AEGTQVGRKA HWVKPQLLAE VAFAGWTQTR HVRQAVFRGL REDKPPREIV RETPAPAATV
AGPSPTPPAA PRPASSEATP SRARSTMTSR RTASAPSPAS PPSSLRVTHG DRVIDAASGT
TKLDLVRYYA LVAPLMMEHL RQRPVSVVRA PEGVGGELFF QKHPEHGSVD GVRTLDPALD
PGHPPLAEIA GPEGLPAWAQ MNTIEFHSWN ARSDRIDRPD RMAFDLDPGE GVPWDKVQEA
TTLMRVMLTE LGLPGFLKTS GGKGLHVVVP IKRLYGWDAV KGFSQAVVQH MARTIPQLFV
AKSGPRNRVG KIFVDYLRNG FGATTVSAWS ARARPGLGIS VPLRWDELGA LSSSTEWTVA
TVEDRLREGN APWDGYAKAA VSITQAMKML GYEPPRGGR
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