Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_2085 |
Symbol | |
ID | 4668231 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | - |
Start bp | 2288153 |
End bp | 2289658 |
Gene Length | 1506 bp |
Protein Length | 501 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 639823294 |
Product | major facilitator superfamily transporter |
Protein accession | YP_970441 |
Protein GI | 120610763 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00714059 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.900579 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCCCCCG GCAGCGATAT CCCCGCCCGT CTCGATCGGC TTCCCTGGTC CGCCTGGCAC TGGCGCGTGG TGATCGCGCT GGGCATCGCC TGGGTGCTCG ACGGGCTGGA AGTGACCATC GTCGGCTCCC TGGGCAGCGC GCTGGAGCGC CCCGACACGC TGGGGCTGAC GGCGTCGCAG GTGGGCTGGA CGGCCTCGCT GTACGTGGCC GGCGCGGTGA TCGGTGCCCT CGTGTTCGGC CGCATGGCGG ACGCGCTGGG GCGCAAGCGC CTCTTCATGC TGACCCTGAC GGTGTACATG GTGGCGACCG TGGCCACGGC CTTCACCAGC AGTTTCGCCG CGTTCGCGGT GTGCCGCTTC CTGACGGGCA TCGGCATCGG CGGTGAATAC GCGGCGATCA ATTCCGCCAT CGACGAACTC ATTCCCGCAC GGGTGCGCGG CCGCGTGAAC CTGGCCATCA ACGGCAGTTT CTGGCTGGGC GCGGCCCTGG GGGCCGCCCT GAGCCTGGTG CTGCTGGACG CGCGCGTGCT GGGCCCGGAG TACGGCTGGC GGGCCGCCTT CCTCATGGGC GCTCTGCTGG GCGCCGCCGT GCTGCTGGTG CGACGGCACG TGCCGGAAAG CCCGCGCTGG CTGATCACCC ACGGCCGCGC CGACGAGGCC GAACGCATCG TGGCGGACAT CGAGCGCGGC GTGCATGGCA CAACGAATCC GCGCCCAGCC GGGCCCGCGG CCGCGGCCGC CCCCGCCATG CCCCGCGCGA CCCCGGAAGT CCCGGCCGGC GCGGCTGGCC CGGCAGAACC GCCTGGCCGC CGCACGCTGC CCTCCGCGTC GCAGGTGGTC CAGGTGCTGC TGCGCCGCTA CCCGGAGCGC AGCGCCGTGG TGCTGGCGCT GATGGTGTCG CAGGCGTTCT TCTACAACGC GATCTTCTTC ACCTACGCGC TGGTGCTGAC GCGCTTCTAC GGCGTGGACG CCAGCCGGGT GGGCCTCTAC ATCTTCCCCT TCGCCGCCGG GAACGTGCTG GGCCCGCTGC TGCTGGGGCC CCTCTTCGAC CGCATCGGGC GGCGCGTGAT GATTACCGCC ACCTATGCGC TCGCGGGCAT CGCGCTTGCG CTCACCGGCC TGGGCTTCAT GAACGGCTGG CTGGATGCGA CCACGCAGAC CGTGGCCTGG TCGGTGGTGT TCTTCCTGGC CTCGGCCGCC GCGAGTTCCG CGTACCTCAC CGTGAGCGAG GTGTTCCCGC TGGAGATGCG CGCGCTGGCG ATTTCCCTCT TCTACGCCGT GGGCACCGGC GTGGGCGGTT TCGCGGCCCC GGCCCTGTTC GGCGCGCTGA TCGATACCGG CAGCCGGGAG AACGTGTTCA TGGGTTACCT GCTCGGCGCG GCGCTGGTGC TGCTGGCGGC GGGCGTGACG TGGCGCTGGG CGGTGGATGC GGAGCGGAAA TCGCTGGAAG AGATCGCGCC GCCGCTGGGA AGCGACGGCA ACGGTGATTC GTTGAATCGC CGTTGA
|
Protein sequence | MSPGSDIPAR LDRLPWSAWH WRVVIALGIA WVLDGLEVTI VGSLGSALER PDTLGLTASQ VGWTASLYVA GAVIGALVFG RMADALGRKR LFMLTLTVYM VATVATAFTS SFAAFAVCRF LTGIGIGGEY AAINSAIDEL IPARVRGRVN LAINGSFWLG AALGAALSLV LLDARVLGPE YGWRAAFLMG ALLGAAVLLV RRHVPESPRW LITHGRADEA ERIVADIERG VHGTTNPRPA GPAAAAAPAM PRATPEVPAG AAGPAEPPGR RTLPSASQVV QVLLRRYPER SAVVLALMVS QAFFYNAIFF TYALVLTRFY GVDASRVGLY IFPFAAGNVL GPLLLGPLFD RIGRRVMITA TYALAGIALA LTGLGFMNGW LDATTQTVAW SVVFFLASAA ASSAYLTVSE VFPLEMRALA ISLFYAVGTG VGGFAAPALF GALIDTGSRE NVFMGYLLGA ALVLLAAGVT WRWAVDAERK SLEEIAPPLG SDGNGDSLNR R
|
| |