Gene Aave_1888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAave_1888 
Symbol 
ID4668442 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax citrulli AAC00-1 
KingdomBacteria 
Replicon accessionNC_008752 
Strand
Start bp2043615 
End bp2044340 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content72% 
IMG OID639823097 
ProductNUDIX hydrolase 
Protein accessionYP_970246 
Protein GI120610568 
COG category[L] Replication, recombination and repair
[R] General function prediction only 
COG ID[COG0494] NTP pyrophosphohydrolases including oxidative damage repair enzymes 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00118194 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCTCTT CCCCATCCAC CGCGGCCGCA GCCACTGCCG GGCCGCTGAC GGCCCTGCCA 
GGATTCGATC CCCGGACGGT TCCGGTGCTG GGGACCGACG CCCACCTGCC CGCCGTGCCG
GCCGCTGCGT GGGCGCCCGA GGCGCTGCGC CGGCGCTTCG CCGCGCCGCC GTCCTGGACG
CCCGACGTGC TGCGCGAGAG GGCCATGACG ACCCGCGCGC CGCGCGATGC GGCCGTGCTG
CTGGCGATCA TGCTGCGCGA TGAGCCGACC GTGCTGCTGA CGGAGCGCAC CGCGCATCTG
TCCAACCATT CGGGGCAGGT GGCCTTCCCG GGCGGACGCG TCGATCCGGG CGATGCGGAC
GCCGCTGCCG CCGCGCTGCG CGAGGCGCGC GAAGAAGTGG GCCTCGACAG CGGCAGGGCG
GAGGTGCTGG GCACGCTGCC CGTCTATGCC ACCGGCACGG CCTTCCTCGT CACGCCCGTG
GTGGCGCTGG TCCAACCGGA AGGCAGCTTC CAACCCAATC CTTATGAAGT GGCCGATATC
TTCGAGGTGC CGCTGGCCTT CCTGCTGGAC CCGTCGAACC ACCGGCGCCA TGCCCTCGAC
ATCGGCGGTG CCCTGCGCGA GTGGTTCTCC ATGCCCTACA CCGATCCGGC GACGGGCAAG
GACCACTTCA TCTGGGGTGC CACGGCGGGC ATGCTGCGCA ATTTCTACCG CTTCCTGCTG
GCCTGA
 
Protein sequence
MSSSPSTAAA ATAGPLTALP GFDPRTVPVL GTDAHLPAVP AAAWAPEALR RRFAAPPSWT 
PDVLRERAMT TRAPRDAAVL LAIMLRDEPT VLLTERTAHL SNHSGQVAFP GGRVDPGDAD
AAAAALREAR EEVGLDSGRA EVLGTLPVYA TGTAFLVTPV VALVQPEGSF QPNPYEVADI
FEVPLAFLLD PSNHRRHALD IGGALREWFS MPYTDPATGK DHFIWGATAG MLRNFYRFLL
A