| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1885 |
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| Symbol | rimM |
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| ID | 4665271 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | + |
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| Start bp | 2041611 |
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| End bp | 2042186 |
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| Gene Length | 576 bp |
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| Protein Length | 191 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639823094 |
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| Product | 16S rRNA-processing protein RimM |
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| Protein accession | YP_970243 |
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| Protein GI | 120610565 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0110154 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCCGCCC TTCCCATCCT CGATCCCGCC GACCTGCCCG CCGACGCGGT GGAAGTAGGG
CGCATCGCGG ACGCCTGGGG CGTCAAGGGC TGGTTCAAGG TGCTGCCCTA CAGCGCCGAT
CCCGAAGCGC TGTTTTCCTC CAAGCGGTGG TACCTGCAGC CCAGCGAGAA GGGCGCGAAG
AGCTTTTTCA CGGGAACCGT GCTGCTGCCC ATCCGCCAGG CGCGCGAGCA TTCCGACTCC
GTCGTCGCGC AGGCCCAGGG CGTGGACGAC CGCGACGCCG CCGAGGCCCT GCGGGGCGCC
CGCATCTTCG TGCCCCGCTC GAGCTTTCCC ACGGCGGCCG AGGACGAGTA CTACTGGGTC
GATCTCATCG GCCTGGAAGT GGTCAACCGC GAGGGCGTCG CGCTGGGCTC CGTGCGCGAA
CTGCTCGCCA CGGGGCCGCA GACGACCCTG GTGCTGTCGT TCCCGCAGGA GGGCGGCAAG
GAGGGCGAGC GCATGATTCC CTTCGTGTCC GCCTTCGTCG ATCGGGTGGA CATCGCCGGG
CGCCGCATCG TGGTGGACTG GCAGCCGGAT TACTGA
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| Protein sequence | MPALPILDPA DLPADAVEVG RIADAWGVKG WFKVLPYSAD PEALFSSKRW YLQPSEKGAK
SFFTGTVLLP IRQAREHSDS VVAQAQGVDD RDAAEALRGA RIFVPRSSFP TAAEDEYYWV
DLIGLEVVNR EGVALGSVRE LLATGPQTTL VLSFPQEGGK EGERMIPFVS AFVDRVDIAG
RRIVVDWQPD Y
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