| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1480 |
|---|
| Symbol | |
|---|
| ID | 4666896 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 1637101 |
|---|
| End bp | 1638975 |
|---|
| Gene Length | 1875 bp |
|---|
| Protein Length | 624 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639822683 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_969845 |
|---|
| Protein GI | 120610167 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCCGC GGCTGGTCGA GTACTACAAC CGGGAGCTGA GCTACCTGCG CGAACTGGGC
GCGGAGTTCG CTGCCGCCTT CCCGAAAGTC GCCGGGCGGC TGTCGCTGCG CGAGCTGGAG
GTGGCCGATC CCTACGTGGA GCGGCTGCTC GAGGGCTTCA GCTTCCTCAC GGCACGCATC
CAGATGAAGA TGGACGCGGA GTTTCCGCGT CTCTCGCAGC GCATCCTGGA GATGGTCTGT
CCCCATTACC TGGCCCCGAC GCCGTCGATG GTGGTCGTGC AGATGGAGCC CAGCGGCACG
GAGGGCAGCC TGGTCGAAGG CTACACCCTG GAGGCCGGCA GCGTGATCCG CGGGCGCAAG
ACCGCGGAAG ACCAGACGCC GTGCGATTTC CGCACCGGAC ATGCGGTCAC GCTCTGGCCC
ATCGATCTGC AGCAGGCCCG CCTGGGCGGG CCGCCGCTGG ACCTGCCGCT GTCGCGTTTC
GGACTGGCGG AAGAGGCTGC CGGCCATCTG CGTTTCACGC TGTCGGTGCG CGGCGCCGCG
CAGTGGCGCA ACCTGCGCAT GGACCGGCTC GACCTGCACA TCTCCGCGGG GGACGCCGTG
GCGTCGCACC TGCAGGAGCT GATCCACGAG TCCGTCATGG GCGTCATCGT CCACGATCCG
CAGGACGCAT CCAGGGTCTG GGCCCAGTTG CCGGCGGAGT CCGTGCAGCC GGAGGGGTAC
GAGCAGTCCC AGGCCCTGCT GCCCTACACC CACCGGGCAT TCCAGGGGCA CCGGCTGCTG
CACGAGTATT TCGCCTTTCC CGCGCGGTTC CGCTTTTTCT CGATCCGGGG GCTGCGGGAG
GCGCTCGACC GCGTGCCGGG CCCGCAGGTC GGCATCACGC TGCTGCTGCG GCGCGCGCAG
CCCACGCTGG AAGCGCAGGT GGACCGCAAC AAATTTCTCC TGCACTGCGT GCCGGCGATC
AATTTGTTCG AACGCCCGGC CGACCGCATC CACGTGTCCC CGGGCGTCAG CGAATACCAC
GTGGTGCCGG ACCGGACGCG GCCGCGCGAT TTCGAGGTCT ATTCGATTCT CGGCGTGACA
GGCCACCGGG AGGGGCAGCT CAAGGACCAG GATTTCCTGC CGTTCTTCGC GTCGGTGCAC
GGCCTGCGCG CGAGCGAACA GGCCTATTTC GCCGTGCGCA GGGAGCCGCG CCTGTTCTCG
GAGCATGCCA CGCGTTTCGG GCCGCGCACC CAGTATCTGG GCAGCGAGGT TTTCATCTCG
CTGGTGGACC AGAGGGCAGC GCCGTTCGCG GACGACCTCA AGCAGCTCAG CGTGCGGACG
CTGTGCACCA ACCGCGACCT GCCGCTGCTC ATGGGGGGCA AGGGCGAGCA GAGCGACTTC
AGCCTGGTGG AGTCCGCGCC CGTGGCCTCG GTGCGCACGG TGGCCGGCCC GACGCGGCCC
ACGGCCAGCA TCGCCGAGAA CGAGATGACC TGGCGGCTGA TCTCGCACTT GTCCCTCAAC
TACCTGGCGA TGAGCGACCT GTCGGAGGAA GAGGGCGCGG CGACGCTGCG CGATCTGCTG
CGGCTCTACA TCGACCACGG GGACCGCGAC CTGTCCGGGC AGATCGCGGC GATCCGGTCG
CTGGCGATCG CGCCGGTCAC GCGCCGGCTG CCCCAGCACG GGCAACTGGT CTATGGCCGC
GGCGTGGGCA TCACCCTGGG CGTGGACGAA GGGCCGCTCG CGGGCGTGAG CCCCTGGCCC
CTCGCGTCGA TCCTGGAGCG CTTCTTCGCC CGCCATGTGG GTGTCAACAG CTATACCGAA
CTGTCGCTGC GGTCGCGGCA GCGGGGGGCG GTAGCGCGCT GGAAGGTGCG CCCCGGCCAG
AGGCCCGCGG CATGA
|
|---|
| Protein sequence | MNPRLVEYYN RELSYLRELG AEFAAAFPKV AGRLSLRELE VADPYVERLL EGFSFLTARI
QMKMDAEFPR LSQRILEMVC PHYLAPTPSM VVVQMEPSGT EGSLVEGYTL EAGSVIRGRK
TAEDQTPCDF RTGHAVTLWP IDLQQARLGG PPLDLPLSRF GLAEEAAGHL RFTLSVRGAA
QWRNLRMDRL DLHISAGDAV ASHLQELIHE SVMGVIVHDP QDASRVWAQL PAESVQPEGY
EQSQALLPYT HRAFQGHRLL HEYFAFPARF RFFSIRGLRE ALDRVPGPQV GITLLLRRAQ
PTLEAQVDRN KFLLHCVPAI NLFERPADRI HVSPGVSEYH VVPDRTRPRD FEVYSILGVT
GHREGQLKDQ DFLPFFASVH GLRASEQAYF AVRREPRLFS EHATRFGPRT QYLGSEVFIS
LVDQRAAPFA DDLKQLSVRT LCTNRDLPLL MGGKGEQSDF SLVESAPVAS VRTVAGPTRP
TASIAENEMT WRLISHLSLN YLAMSDLSEE EGAATLRDLL RLYIDHGDRD LSGQIAAIRS
LAIAPVTRRL PQHGQLVYGR GVGITLGVDE GPLAGVSPWP LASILERFFA RHVGVNSYTE
LSLRSRQRGA VARWKVRPGQ RPAA
|
|---|
| |