Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_1456 |
Symbol | |
ID | 4667421 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | - |
Start bp | 1603235 |
End bp | 1604095 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639822655 |
Product | farnesyl-diphosphate farnesyltransferase |
Protein accession | YP_969821 |
Protein GI | 120610143 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1562] Phytoene/squalene synthetase |
TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGACAAT CCTCCTTCAT GACACCGGAA CAGTACGTCC AACAAAAAGC CGCGGCGTCC GGCAGCAGCT TCTATTACGC ATTCCTGTTC CTCCCGCCCG CCAGACGGGC CGCCATCACC GCCTTCTATG CATTCTGCCG CGAGGTGGAC GACGTGGTGG ACGAGGTGTC GGACGCCGGC GTGGCCCGGA CCAAGCTGGC CTGGTGGCAG GCGGAAGTCG CCCGCTCGTT CGCGGGCCAG CCCCCGGCGC ATCCCGTGAT GCAGGCCTTG ATGCCGCACA CCGGCATGTA CGGCATCGAG GAGCGCCACC TGCAGGCCGT GATAGAGGGG TGCCAGATGG ACCTCGAACA GACCCGCTAC CTGGACTTCC AGGGCCTTTC TCGGTATTGC CACCTGGTGG CGGGCATCGT CGGCGAGGTG GCGGCGCGCA TCTTCGGCCC CTCCGACGAA CGCACCGTGG AATACGCCCA TACCCTGGGC CTCGCTTTCC AGCTGACGAA CATCATCCGG GACGTCGGCG AGGACGCGAT GATGGGCCGC ATCTACCTTC CCGTGGCGGA GCTGCAGCAG TTCGACGTCA AGGCCCATGA AATCCTGAAG CGGCAGTATT CCGACCGTTT CACGGCGCTG ATGCGCTTCC AGGCAGAACG CGCCCATGGT CTTTATGACA AGGCCCTCTC CCTGCTCCCG GGCGACCAGC GGCGGGCACA GAAACCCGGA TTGATGATGG CCAGCATTTA CCGGACCCTG CTGCGGGAAA TCGAGAGGGA CCAGTTCCAG GTGCTGCACC AGCGGATCGC ACTCACGCCC CTGCGCAAGC TGTGGCTGGC GTGGAAGATG CAGGCCCTGG GCCGGATGTG A
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Protein sequence | MGQSSFMTPE QYVQQKAAAS GSSFYYAFLF LPPARRAAIT AFYAFCREVD DVVDEVSDAG VARTKLAWWQ AEVARSFAGQ PPAHPVMQAL MPHTGMYGIE ERHLQAVIEG CQMDLEQTRY LDFQGLSRYC HLVAGIVGEV AARIFGPSDE RTVEYAHTLG LAFQLTNIIR DVGEDAMMGR IYLPVAELQQ FDVKAHEILK RQYSDRFTAL MRFQAERAHG LYDKALSLLP GDQRRAQKPG LMMASIYRTL LREIERDQFQ VLHQRIALTP LRKLWLAWKM QALGRM
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