| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1406 |
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| Symbol | |
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| ID | 4667326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | - |
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| Start bp | 1541468 |
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| End bp | 1543813 |
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| Gene Length | 2346 bp |
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| Protein Length | 781 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 639822600 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_969771 |
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| Protein GI | 120610093 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCTC AAAAGTCCGC GAAGTCGCCC AAGTCCGCCC CCGATACCGC CGCGAAGGCC
GCCTCCACCT CGAAAACCGC GACCCAGGCC GCTCCTGCCG CAAAGAAAGC TCCATCCGTG
CCCGTGAACA AGTCCGCCGA CAAGCCCGAA GCCTCCGAAG AAACCACCGC CAAGAAGGCG
AGCCGCGCGA AGGCCGCGGC CCCTGCGGCG GCCGATGACG ACGAGACGCC CAAGAAGCGC
CCCGGCCGCC CGGCCAAGGC AGCCACCGCC GCCGCCGGCA AGGCCCCCGC CAAGCGCGGC
CGCAAGCCCA AGGCCGCCGA GGACGATTCC GCGGGCGACG ACGCCGACCT GTCGGACATC
GAATCCGAAC TCGAGGGCGA GGTCGAGGCC GAGCCGGCCG AGGCGGCGCC CACCGCCGAG
AAGGTCAAGC CCCTGCGCAT GAAGATCAGC AAGGCGAAGG AACGCGCCTT GATGAAGGAA
TTCGGCCTGG ACGACACCGT CCTGTCCGAG GAAGACCTGG CCAAGCGCCG CTCGCGCCTG
AAGGCCCTGA TCACGCTGGG CAAGACCCGT GGCTACCTGA CCCAGGTCGA GATCTCCGAC
CACCTGCCCG ACAAGCTGGT CGATGCCGAG ACCATGGAAG TCGTGGTCAC CATGCTCAAC
GACATGGGCG TGGCCGTGTA CGAGCAGACG CCCGATGCCG AGACGCTGTT CCAGAACAAC
GTCACCCCCA CCGCCACCAC CGTCGAGGAA GCCGAGGAAG AAGCCGAGGC CGCCCTCTCC
ACCGTGGACA GCGAATTCGG CCGCACCACC GACCCGGTCC GCATGTACAT GCGCGAGATG
GGCACGGTGG AACTGCTCAC CCGCGAGGGC GAGATCGAGA TCGCCAAGCG CATCGAAGGC
GGCCTGCAGG CCATGATGGA AGCCATCAGC GCATCGCCCG CCACCATCGC CGAGATCCTG
GCGATGGGCG AGGAGATCCG CGAGGGCAAG GTCGTCATCT CCACCATCGT GGACGGCTTC
TCCAACCCCA ACGAGGCCGA CGACTACGTG GCCGAGGAAG ACTTCGACGA ATTCGACGAA
GAGGACGACG ACGACGGCAA GGGCGGCTCC AAGGCCCTGA CCAAGAAGCT GGAAGAGCTC
AAGAACGAAG CGCTGCGCCG GTTCGACAAC CTGCGCGGGC TCTTCGAGAA GATGCACAAG
ATCTACGACA AGGAAGGCTA CGGCACGCCG GCCTACATGA AGGCCCAGCA CGCCATCTCG
GCCGAACTGA TGACCATCCG CTTCACGGCC AAGACCATCG AGAAGCTGTG CGACATGGTC
CGCGCCCAGG TGGACGACGT GCGCAAGAAG GAGCGCGAGC TGCGCCGCAT CATCGTGGAC
AAGTGCGGCA TGCCGCAGGA AACCTTCATC AAGGACTTCC CGCCCAACCT GCTGAACCTG
CAGTGGGTCG AGAAGCAGGC CGCCGCCGGC AAGCCCTGGA GCGCCGTGCT CGCGCGCAAC
ATCCCGCCGG TGCAGGAGCT GCAGCAGCGC CTGATGGACC TGCAGTCCCG CGTGGTGGTG
CCGCTGTCCG AGCTCAAGGA CATCAACAAG CGCATGAACG AGGGCGAGTC GGCCTCGCGC
GACGCGAAGA AGGAAATGAT CGAGGCCAAC CTGCGCCTCG TGATCTCCAT CGCCAAGAAG
TACACCAACC GCGGCCTGCA GTTCCTCGAC CTGATCCAGG AAGGCAACAT CGGCCTGATG
AAGGCGGTGG ACAAGTTCGA ATACCGCCGC GGCTACAAGT TCTCGACGTA CGCCACGTGG
TGGATCCGCC AGGCCATCAC GCGCTCGATC GCCGACCAGG CGCGCACCAT CCGGATCCCG
GTGCACATGA TCGAGACGAT CAACAAGATG AACCGCATCA GCCGCCAGCA CCTGCAGGAG
TTCGGCTTCG AGCCCGATGC GTCCATCCTG GCCGCGAAGA TGGAGATCCC CGAGGACAAG
ATCCGCAAGA TCATGAAGAT CGCCAAGGAG CCGATCTCCA TGGAAACGCC GATCGGCGAC
GACGACGACA GCCACCTGGG CGACTTCATC GAGGACGGTG CCAACACCGC CCCGATCGAC
GCCGCCATGC AGGCCGGCCT GCGCGACGTG GTCAAGGACA TCCTGGACGG CCTCACGCCG
CGCGAAGCCA AGGTGCTGCG CATGCGCTTC GGCATCGAGA TGTCCACCGA CCACACGCTG
GAAGAAGTCG GCAAGCAGTT CGACGTGACC CGCGAGCGCA TCCGCCAGAT CGAGGCCAAG
GCGCTGCGCA AGCTCAAGCA CCCGAGCCGC AGCGACAAGC TGCGCAGCTT CATCGATTCG
CTCTGA
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| Protein sequence | MPAQKSAKSP KSAPDTAAKA ASTSKTATQA APAAKKAPSV PVNKSADKPE ASEETTAKKA
SRAKAAAPAA ADDDETPKKR PGRPAKAATA AAGKAPAKRG RKPKAAEDDS AGDDADLSDI
ESELEGEVEA EPAEAAPTAE KVKPLRMKIS KAKERALMKE FGLDDTVLSE EDLAKRRSRL
KALITLGKTR GYLTQVEISD HLPDKLVDAE TMEVVVTMLN DMGVAVYEQT PDAETLFQNN
VTPTATTVEE AEEEAEAALS TVDSEFGRTT DPVRMYMREM GTVELLTREG EIEIAKRIEG
GLQAMMEAIS ASPATIAEIL AMGEEIREGK VVISTIVDGF SNPNEADDYV AEEDFDEFDE
EDDDDGKGGS KALTKKLEEL KNEALRRFDN LRGLFEKMHK IYDKEGYGTP AYMKAQHAIS
AELMTIRFTA KTIEKLCDMV RAQVDDVRKK ERELRRIIVD KCGMPQETFI KDFPPNLLNL
QWVEKQAAAG KPWSAVLARN IPPVQELQQR LMDLQSRVVV PLSELKDINK RMNEGESASR
DAKKEMIEAN LRLVISIAKK YTNRGLQFLD LIQEGNIGLM KAVDKFEYRR GYKFSTYATW
WIRQAITRSI ADQARTIRIP VHMIETINKM NRISRQHLQE FGFEPDASIL AAKMEIPEDK
IRKIMKIAKE PISMETPIGD DDDSHLGDFI EDGANTAPID AAMQAGLRDV VKDILDGLTP
REAKVLRMRF GIEMSTDHTL EEVGKQFDVT RERIRQIEAK ALRKLKHPSR SDKLRSFIDS
L
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