| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1066 |
|---|
| Symbol | |
|---|
| ID | 4669232 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 1169542 |
|---|
| End bp | 1170132 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639822265 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_969437 |
|---|
| Protein GI | 120609759 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3663] G:T/U mismatch-specific DNA glycosylase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.187825 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCGTT CGTCCCGTTT GCCCGATAGC CCCCCCGCCG ACCCGCGGCC CGCCGCGCCT
GTACGCCTGG TGGGGCTGGC GCCGGTCGTC TCGGAGCGCA CGGTGGTGCT GGTGCTGGGC
AGCTTCCCGG GCGTGGCGTC GCTGCGCGCG GGCCAGTACT ACGGCCATCC GCAGAACCAT
TTCTGGCCGA TCCTGCAGGC GCTCTGGCCA CGGCATCCGC TGCCCGGGCG GGACCGCTAT
GCGGAGCGCT GCGCCTGGCT GCTGGACCGC GGCCTGGGGC TCTGGGACGT ATATGCCGCC
TGCGAGCGCG AAGGCAGCCT GGACACCAGC ATCCGCAACG CCGCCGTGAA CGATTTCGCG
GCGCTGCGCT CGCGTTGCCC GAGGCTGGCG GCCATCGCCC ACAATGGCGG CGAAAGCTTC
AAGCATGCGC GTGCCGTGCG CACCGCGCTG CAGCTGCCCG CCGGGCTGCA GGACGGCCCG
GTGCCCTCGC TGCGCCTGCC CTCCACCAGC CCCGCGAACG CGTCGTGGAG CTTCGAGCGC
AAGCGCGCCG CCTGGGCCGC GGCCTTCGCC CCCTTTGGAT TGATGGACTG A
|
|---|
| Protein sequence | MPRSSRLPDS PPADPRPAAP VRLVGLAPVV SERTVVLVLG SFPGVASLRA GQYYGHPQNH
FWPILQALWP RHPLPGRDRY AERCAWLLDR GLGLWDVYAA CEREGSLDTS IRNAAVNDFA
ALRSRCPRLA AIAHNGGESF KHARAVRTAL QLPAGLQDGP VPSLRLPSTS PANASWSFER
KRAAWAAAFA PFGLMD
|
|---|
| |