| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_1009 |
|---|
| Symbol | gltD |
|---|
| ID | 4667677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 1110548 |
|---|
| End bp | 1112026 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639822209 |
|---|
| Product | glutamate synthase subunit beta |
|---|
| Protein accession | YP_969381 |
|---|
| Protein GI | 120609703 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01317] glutamate synthases, NADH/NADPH, small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAGA CCACCGGCTT CATGGAATAT GAGCGCATCG AGGAGGGCTA CAAGCCCGTC
GCCGAGCGCC TGAAGCACTA CAAGGAATTC GTCATCGGCC TCGATGACGC GCAGGCCAAG
CTGCAGGGCG CGCGCTGCAT GGACTGTGGC ACTCCGTTCT GCAACAACGG CTGCCCGGTC
AACAACATCA TTCCGGACTT CAACGACCTG GTCTACCAGC AGGACTGGAA GAGCGCCTGG
GCCGTGCTGG ACTCGACCAA CAACTTCCCC GAGTTCACCG GCCGCATCTG TCCCGCGCCC
TGCGAGGCCG CCTGCGTGCT GAACGTGAAT GACGACCCGG TGGGCATCAA GTCCATCGAG
CACGCCATCA TCGACCGCGC CTGGGCCGAG GGCTGGGTGA AGCCGCGCCC GGCCAAGCAC
AGGACCGGCA AGAAAGTGGC CGTGGTGGGC TCCGGCCCCG CGGGCATGGC GGCCGCCCAG
CAGCTCGCGC GCGCCGGCCA CGACGTGACG CTCTTCGAGA AGAACGACCG CATCGGTGGC
CTGCTGCGCT ACGGCATTCC CGACTTCAAG ATGGAGAAGT CGCACATCGA CCGCCGCGCC
GAGCAGATGA AGGCCGAAGG CGTGCAGATC CGCACCGGCG TGCTCGTCGG CACGGCCAAG
GACGGTCTGG GCAAGGGCTC CAAGGTCACC AACTGGGCCA GGGAAACCGT GACGCCCGAG
CAACTGCAGG CCGAGTTCGA CGCCGTGCTG CTGGCCGGTG GCGCCGAGCA GAGCCGCGAC
CTGCCCGTGC CGGGCCGCGA GCTGGACGGC GTGCATTTCG CGATGGAGTT CCTGCCCCAG
CAGAACAAGG TGAATGCGGG CGACAAGCTC AAGGGCCAGA TCCGCGCGGA CGGCAAGCAC
GTCATCGTGA TCGGCGGCGG CGACACGGGC AGCGATTGCG TGGGCACGAG CAACCGCCAC
GGTGCCGCGA GCGTGACGCA GTTCGAGCTG ATGCCCCAGC CGCCCGAGGT GGAAAACCGC
CCGCTCACCT GGCCCTACTG GCCCTACAAG CTGCGCACCA GCTCGAGCCA CGAAGAGGGC
TGCGAGCGCG AGTTCGCCAT CGCCACGAAG GAATTCATCG GCGAGAAGGG CAAGGTCACG
GGCCTGAAGA CCGTGCGCGT CGAATGGAAG GACGGCAAGA TGGTCGAGGT GGCCGGCTCC
GAGCAGACGC TCAAGGCCGA CCTCGTGCTG CTGGCCATGG GCTTCGTGAG CCCCGTGTCG
CCGGTGCTGG AGGCCTTCGG CGTCGAGAAG GACGCGCGCG GCAACGCCCG CGCCACGACG
GAGTTCACCG GCGGCTACGC GACCAACGTG CCCAAGGTAT TCGCTGCCGG CGACATGCGC
CGCGGCCAGT CCCTGGTGGT GTGGGCCATC CGCGAAGGCC GGCAGGCCGC GCGGGCGGTG
GACGAGTTCC TGATGGGTTA CTCCGACCTG CCGCGCTGA
|
|---|
| Protein sequence | MGKTTGFMEY ERIEEGYKPV AERLKHYKEF VIGLDDAQAK LQGARCMDCG TPFCNNGCPV
NNIIPDFNDL VYQQDWKSAW AVLDSTNNFP EFTGRICPAP CEAACVLNVN DDPVGIKSIE
HAIIDRAWAE GWVKPRPAKH RTGKKVAVVG SGPAGMAAAQ QLARAGHDVT LFEKNDRIGG
LLRYGIPDFK MEKSHIDRRA EQMKAEGVQI RTGVLVGTAK DGLGKGSKVT NWARETVTPE
QLQAEFDAVL LAGGAEQSRD LPVPGRELDG VHFAMEFLPQ QNKVNAGDKL KGQIRADGKH
VIVIGGGDTG SDCVGTSNRH GAASVTQFEL MPQPPEVENR PLTWPYWPYK LRTSSSHEEG
CEREFAIATK EFIGEKGKVT GLKTVRVEWK DGKMVEVAGS EQTLKADLVL LAMGFVSPVS
PVLEAFGVEK DARGNARATT EFTGGYATNV PKVFAAGDMR RGQSLVVWAI REGRQAARAV
DEFLMGYSDL PR
|
|---|
| |