| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_0917 |
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| Symbol | |
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| ID | 4667005 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Acidovorax citrulli AAC00-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008752 |
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| Strand | - |
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| Start bp | 999309 |
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| End bp | 1001741 |
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| Gene Length | 2433 bp |
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| Protein Length | 810 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 639822117 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_969289 |
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| Protein GI | 120609611 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.460737 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.382842 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTCCT TGAATTCGCA GCGCCTGCGG TTTGCCCTCC ACGCCATCGC CGCCGGCGCG
ATGCTCGCCG CCGCCGGCGG CCCGTTGAAC GCCCAGACCG CCACCGGCGC GGCGCCGTCC
AGCGTGCGCC CGGGCGAGCC CGTGACGCTG AACTTCGCCG GTGCCGACAT CGAGGCGGTG
GCCCGCACCA TGGCCACGAT CACCGGGCGC AACGTGGTGG TGGACCCGCG CGTGAAGGGC
CAGCTCACTC TGGTCACGGA GCGGGCGGTC CCGCCGGCCG CGGCCTTCCA GCAGTTCCTG
GCAGCCCTGC GCCTGCAGGG CTTCACGGTG GTGGAATCCG CGGGCCTCTA CAAGGTCGTT
CCCGAAGCGG ACGCCAAGCT CCAGTCGGGA TCGGTGACGG TCACCCAGGG CGGCTCGGGC
AGCGCGCCGG GCGGCGGGCA GATCGTCACG CAGATCTTCA AGCTCAATTT CGAGAACGCG
GCCAACCTGG TGCCGGTGCT GCGCCCGCTC ATCAGCCCGA ACAACACGAT CAACGTGAAC
CCGGGCAACA ATTCGCTGGT CATCACCGAC TACGCCGACA ACCTGCAGCG CATCGCGCGC
ATCGTCGCGG CGATGGACGT GTCCAACGCC AGCGACGTGG AAGTGATCCC GCTGCGCAAC
GCGGTGGCGA GCGAGCTCGC GCCGCTGGTG TCGCGCCTGG TGGAGGGCAC GGGCAGCACG
CCCGGCATGG CCACCACCGC GACGGGCACG GCCGGCGCCA TCCCGGGGCA GAGCGACACG
GCCTACCGCA CCACGCTGCT GCCCGAGCCG CGCAGCAACT CGCTGATCGT GCGTGCCGCC
AATCCCGCCC GGCTGGCGCT GGTGCGCACG CTGGTGGACA AGCTCGACCA GGCGCCGGTC
GTGGGAAGCG CGGCGGCGTC GGGGAACATC CACGTGGTGT ACCTGAAGAA TGCGGACGCC
ACCAAGCTCG CGACCACGCT GCGCGCGGCG CTGGCGGCCT CCATGGGCAG CAACGCGGGC
GGCGGTGCCG TGTCCTCCTC CGGCCCGTCC TCTTCCGGCG GCGGTTCGGG CACCGGTTCC
ACCGGGCTCT CGGGCTCGGG GCTCATGCAG ACCGGCAGCA GCGGCGGGAT GGGCGGCGGT
ATGGGCGGCA GCTCGAGCGC CGGTGGCCTG GGCAGCAGCG CGGGCAGCCT GAACAGCGCG
AACAGCAACC AGCCGTCCAC GGGCGGGCAG ATCCAGGCCG ACCCCTCCAC CAACTCGCTG
ATCATCTCCG CGCCCGAGCC GCAGTTCCGG CAACTGCGCG CGGTGATCGA CCAGCTCGAC
GGCCGGCGCG CGCAGGTGCT GGTGGAGAGC CTGATCGTCG AGGTCGCGGC CAACAAGGTC
GCGGACTTCG GCATCCAGTG GCAGGGGGTG ATGGGCAACT ACGGCAACGG CACCATCGGC
GTCATCGGCA CGAACTCCAC GGCATCCGGC GGCGCGAACA TCCTCAACCT CGCGCTCGCC
GCGGCCAGCG GCAGCGTGAG TGGCGTCACC TCCGCGCTCT CGGCCAGCGG GGCGCGGCCG
GGCAACGGGC TGAACGTGGC CATCGCGCCG CGCATCAATG GCAACTACTA CCTGGGCGCG
CTCGCCAACT TCCTCGAGAA CACGGGCGAT GCCAATGTGC TCTCCACCCC CAATCTGCTG
ACGCTGGACA ACGAAGAGGC CCAGATCATC ATCGGCAACA ACGTGCCGTT CGTGACCGGC
TCGTATGCCA ACAGCACGGG CAGCAGCACG GTGAACCCGT TCACCACCGT GGAGCGCAAG
GACGTGGGCC TGATGCTGCG CGTGCGCCCG CAGATCAGCG AGAACGGCAC GGTCAAGCTG
TCTCTATACC AGGAAGTGTC GCAAGTAAAC GACGGCACGG CCAACGCAGT CAATGGCCCG
ACAACGAGCA AGCGCTCGAT CGAATCCACG GTACTGGTCA ACGATGGCAG CGTGATCGTA
CTGGGCGGCC TGCTGGAAGA CCGTTATTCC ATGGGCCAGG ACAAGGTGCC GCTGATGGGT
GACTTGCCTG TCGTGGGCGG CCTTTTCCGC AACGAGAACC GCAGGCGCCA GAAGACCAAC
CTGATGGTCT TCCTGCGCCC GGTGGTGATC CGCGACACGG CCACGAGCGA CGCGCTGATG
ATGGACCGCT ACGAGGCCAT CCGCGCGCTG CAGCAGAACA TCCAGCCCGC CCCCAGCACG
GTCATGCGCG CGGTGTCGGA AGCCCCGGTG CTGCCGCCGC TCGCGCCGTC GCCCGCGGCA
GCCCCCGTGG CCACGCCGCA GGGCGCGGCG CCCGCCGTGC GCAGCGCCCC GCCCGCGCCG
CTGGTGCCGC TCGTGCCGCC GGCTCCGGCG CCGGCACGGG CCCCCGCACG CGCCCCGGCG
CCGGCCGATG CCGGGGCCTA CGACCCGCAG TAA
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| Protein sequence | MTSLNSQRLR FALHAIAAGA MLAAAGGPLN AQTATGAAPS SVRPGEPVTL NFAGADIEAV
ARTMATITGR NVVVDPRVKG QLTLVTERAV PPAAAFQQFL AALRLQGFTV VESAGLYKVV
PEADAKLQSG SVTVTQGGSG SAPGGGQIVT QIFKLNFENA ANLVPVLRPL ISPNNTINVN
PGNNSLVITD YADNLQRIAR IVAAMDVSNA SDVEVIPLRN AVASELAPLV SRLVEGTGST
PGMATTATGT AGAIPGQSDT AYRTTLLPEP RSNSLIVRAA NPARLALVRT LVDKLDQAPV
VGSAAASGNI HVVYLKNADA TKLATTLRAA LAASMGSNAG GGAVSSSGPS SSGGGSGTGS
TGLSGSGLMQ TGSSGGMGGG MGGSSSAGGL GSSAGSLNSA NSNQPSTGGQ IQADPSTNSL
IISAPEPQFR QLRAVIDQLD GRRAQVLVES LIVEVAANKV ADFGIQWQGV MGNYGNGTIG
VIGTNSTASG GANILNLALA AASGSVSGVT SALSASGARP GNGLNVAIAP RINGNYYLGA
LANFLENTGD ANVLSTPNLL TLDNEEAQII IGNNVPFVTG SYANSTGSST VNPFTTVERK
DVGLMLRVRP QISENGTVKL SLYQEVSQVN DGTANAVNGP TTSKRSIEST VLVNDGSVIV
LGGLLEDRYS MGQDKVPLMG DLPVVGGLFR NENRRRQKTN LMVFLRPVVI RDTATSDALM
MDRYEAIRAL QQNIQPAPST VMRAVSEAPV LPPLAPSPAA APVATPQGAA PAVRSAPPAP
LVPLVPPAPA PARAPARAPA PADAGAYDPQ
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