Gene Aave_0558 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAave_0558 
Symbol 
ID4669715 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax citrulli AAC00-1 
KingdomBacteria 
Replicon accessionNC_008752 
Strand
Start bp604492 
End bp606534 
Gene Length2043 bp 
Protein Length680 aa 
Translation table11 
GC content67% 
IMG OID639821763 
ProductDNA topoisomerase III 
Protein accessionYP_968937 
Protein GI120609259 
COG category[L] Replication, recombination and repair 
COG ID[COG0550] Topoisomerase IA 
TIGRFAM ID[TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCGTTG TTCTGTGCGA GAAGCCCTCC CAAGGCAAGG ACATCGCGAG GGTCCTGGGC 
GCACGCCAGC GTGAAGCGGG CTGCCTGGCC GGGCCGGGCA TCAAGGTCAC CTGGGGCATC
GGCCACCTGA TCGAGGCTGC GCCCCCGGAG GCCTACGGCG AGCACTTTCA GCGCTGGTCG
CTGGAGACGC TGCCGATCGT TCCACAGCAG TGGCGGTGGG TGGTCAAGGC CGACACCGCC
TCGCAATTCA AGGTCGTCCA GCGCCTGCTG GCACAGGCGT CCGAACTCAT CATTGCCACG
GACGCCGATC GCGAGGGCGA GATGATCGCC CGCGAGTTGA TCGAGTACTG CGGATACCGC
GGACCCATAC AACGGCTATG GCTCTCCGCG CTCAACGATG CGTCGATCCG CAAAGCGCTG
GGCGCCCTGC GGGCATCGCA CGAAACGCTT CCGCTGTACC ACTGCGCGCT CGCGCGCTCC
CATGCGGACT GGCTCGTCGG CATCAATCTC ACGCGCCTGT TCACGCTGCT GGGGCGCAAG
GCCGGTTTCG ACGGGGTGCT TTCGGTGGGC CGCGTGCAGA CGCCCACCCT CAAGCTGGTC
GCTGACCGCG ATCGGGAGAT TGCGGCGTTC GTTCCGGTCC CGTTCTGGTC CATCGAGGTC
TCGCTCTCGG CGGGCGCGCA GGCGTTCTCC GCACACTGGG TTCCACCTGC AACCGTCACG
GACGCTGCAG GCCGGTGCTT ACAGCAGAGC GCGGCTCAAC ACGCGGCGGC CGCCGTCCGC
ACGGCCGGGC ACGCGCAGGT CACGGGCATT GATACCGAGC GTGTGCAGGA AGGCCCTCCG
CTTCCGTTCG ACCTCAGCAC GCTGCAGGAA GTCTGTTCAC GGCGTCTCGG CCTCGACGTG
CAGGAGACGC TCGACATCGC CCAGGCCTTG TACGAGACGC ACAAAGCGAC GACGTATCCG
CGCACCGACG CGGGCTATCT GCCAGAGAAC ATGCTCACCG AGGTTCCCAC CGTCATCCGG
AGCCTGTTGA AGACGGACCC GGCGCTGCAA CCGCTCATGC AGCGCCTCGA CCTGGGTCAG
CGCTCCCGCG CCTGGAACGC CACCAAGATC GCGGCCCACC ACGCCATCAT CCCGACGCTG
GAGCCTGCCG ACCTGTCGAA GATGTCCGAG AAGGAACTGG CCGTGTACCG GCTCATCCGC
GCCCACTACC TGGCCCAGTT CCTTCCCCAC TATGCCTATG ATCGAACGAT GGTGCGCCTC
GCATGCGGCG GCCAAGCGCT GCAGGCGTCC GGGAAGCAGG TCGTCGATGC GGGCTGGAAG
GCCGCGTTCG CTGCTCCCTC GATCCCCGGT GCAGGGGCGG AGACTCCCGA AGCCGAGACG
GACAGCGAAG CTCCGCGCGA CCAGGCGCTG CCGACACTGC ACGAAGGGAT GGCCTGCGAG
GTCAGGTCGC TCGATCTGAA GTCGCTGTAC ACCAAGTCTC CGCCCCCCTA CACCCAGGGC
GAGCTCGTCA AGGCGATGAA GACCGTCGCC AAGCTCGTCA CCGATCCGCG ACTGAAGCAA
ACGCTGAGGG ACACCACGGG CATCGGAACG GAGGCGACGC GCGCGAACAT CATCAGCGGG
TTGCTCGCGC GCGGGTTCCT GGTGCGCAAG GGCCGCGTGG TTCGCGCATC CAAGACCGCG
ATGACGCTCA TCGACGCAGT TCCCGCAGCG ATTGCGGACC CCGGCACCAC GGCAATATGG
GAGCAGGCGC TGCACATGAT CGAGGCGCGC ACGATGGACC TCGACACGTT CGTCTCGAAG
CAGGCCGCAT GGGTTTCGCA GCTGGTCGAA CAGCATCGCG AAGCGACCCT CGCGATCCGC
GTTCCTGCGG GTCCGCCATG CCCGCTCTGC GGTGCCGCAA CGCGCAAGCG CACCGGCAAA
ACCGGAGCCT TCTGGTCCTG CTCCCGCTAT CCTGACTGCA AGGGTACCGT TGCGATCGAT
TCCGCCGAAG CGGGCCGGCG CAACGGGCCG CGCAAGCCGC GCGCCGCCCG AAAGCTTCAC
TAG
 
Protein sequence
MRVVLCEKPS QGKDIARVLG ARQREAGCLA GPGIKVTWGI GHLIEAAPPE AYGEHFQRWS 
LETLPIVPQQ WRWVVKADTA SQFKVVQRLL AQASELIIAT DADREGEMIA RELIEYCGYR
GPIQRLWLSA LNDASIRKAL GALRASHETL PLYHCALARS HADWLVGINL TRLFTLLGRK
AGFDGVLSVG RVQTPTLKLV ADRDREIAAF VPVPFWSIEV SLSAGAQAFS AHWVPPATVT
DAAGRCLQQS AAQHAAAAVR TAGHAQVTGI DTERVQEGPP LPFDLSTLQE VCSRRLGLDV
QETLDIAQAL YETHKATTYP RTDAGYLPEN MLTEVPTVIR SLLKTDPALQ PLMQRLDLGQ
RSRAWNATKI AAHHAIIPTL EPADLSKMSE KELAVYRLIR AHYLAQFLPH YAYDRTMVRL
ACGGQALQAS GKQVVDAGWK AAFAAPSIPG AGAETPEAET DSEAPRDQAL PTLHEGMACE
VRSLDLKSLY TKSPPPYTQG ELVKAMKTVA KLVTDPRLKQ TLRDTTGIGT EATRANIISG
LLARGFLVRK GRVVRASKTA MTLIDAVPAA IADPGTTAIW EQALHMIEAR TMDLDTFVSK
QAAWVSQLVE QHREATLAIR VPAGPPCPLC GAATRKRTGK TGAFWSCSRY PDCKGTVAID
SAEAGRRNGP RKPRAARKLH