Gene Aave_0453 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAave_0453 
Symbol 
ID4668516 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax citrulli AAC00-1 
KingdomBacteria 
Replicon accessionNC_008752 
Strand
Start bp490347 
End bp491405 
Gene Length1059 bp 
Protein Length352 aa 
Translation table11 
GC content67% 
IMG OID639821660 
Producttype III secretion system protein HrcU 
Protein accessionYP_968834 
Protein GI120609156 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1377] Flagellar biosynthesis pathway, component FlhB 
TIGRFAM ID[TIGR01404] type III secretion protein, YscU/HrpY family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.959251 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0822049 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGAAA AAACCGAAGA GCCCACAGCC AAGAAACTCA AGGACGCCCG CAAGAAGGGC 
CAGACCACCA AGAGCCAGGA CCTGGTGGCC GGTGCCGTCC TGGGCGCGGC CCTGCTCGTG
CTCACGGGCG CGGGGCCCAT GCTCTACGAC CGCGTGCGCC GCATCGTCAC CACGGCGCTG
GAACAGGGCG TGCGCGTGCA CAGCACGCAG GAGCTGCTGG CGCTGCTGTC CTCCATGGCG
CTCGACGGCA TGGCGGTTGC CTTCGGCATG GTCATCGTCT CGGTGCTGGT GGCCGTGCTG
GCCCTGCTGC CGCAGGTCGG CTTCATGATC ACCTTCGAGC CCCTCACGCC CAAGTTCGAC
AGCCTGAACC CGGCCGAAGG ACTCAAGAAG ATGTTCAACG CGCGGTCGCT CGTCGAATTC
GCCAAGTCCG TCCTCAAGGC CGTCGTCTTC GGCGCCGTGC TGTGGCACAT CGTGACCGGG
CTGGTACCCC TGCTCGTGGG CTCCGTCTAT CTCACGCCCG AGGCCAGCGG ACAGATCGCC
TGGAGCGCGC TGCTGAAACT CTTTTCGTTC GCATTCCTCG TCTTCCTGGT CATCGGCCCC
CTCGACTTCG GCCTGCAGCA CTGGCTCTTC ATGCGGGACC AGCGCATGAG CAAGGACGAC
GTGAAGCGCG AGAACAAGGA CAGCGAAGGC GATCCGCACC TCAAGGGCCA TCTCAAGTCG
CTGCGCGAGG AAATGGCGAC ATCGCCGCCG CAGGAACGGG TGCCGGGCGC CACGGTGGTC
GTCACCAACC CCACCCATTA CGCCGTGGCG CTGCGCTACG AAGCCGGCGC GACCCCGTTG
CCCATCGTCG TGGCCAAGGG CATGGACGAA CAGGCGGCCG TCATCCGCGG CCTGGCCGCG
CTGCACCACA TCCCGCTCAT CGCCAATCCG CCGCTGGCGC GCGCCCTGCA CAAGCTGCCG
CTGGACCAGC CCATTCCCGA GGAACTGTTC GAAGCCGTCT CCGTCGTGCT GCGCTGGGTG
GCCGAACTCG ACCGGCTCGG CGGCGGCAGC CCGCGCTGA
 
Protein sequence
MSEKTEEPTA KKLKDARKKG QTTKSQDLVA GAVLGAALLV LTGAGPMLYD RVRRIVTTAL 
EQGVRVHSTQ ELLALLSSMA LDGMAVAFGM VIVSVLVAVL ALLPQVGFMI TFEPLTPKFD
SLNPAEGLKK MFNARSLVEF AKSVLKAVVF GAVLWHIVTG LVPLLVGSVY LTPEASGQIA
WSALLKLFSF AFLVFLVIGP LDFGLQHWLF MRDQRMSKDD VKRENKDSEG DPHLKGHLKS
LREEMATSPP QERVPGATVV VTNPTHYAVA LRYEAGATPL PIVVAKGMDE QAAVIRGLAA
LHHIPLIANP PLARALHKLP LDQPIPEELF EAVSVVLRWV AELDRLGGGS PR