Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_0453 |
Symbol | |
ID | 4668516 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | - |
Start bp | 490347 |
End bp | 491405 |
Gene Length | 1059 bp |
Protein Length | 352 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639821660 |
Product | type III secretion system protein HrcU |
Protein accession | YP_968834 |
Protein GI | 120609156 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.959251 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.0822049 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGGAAA AAACCGAAGA GCCCACAGCC AAGAAACTCA AGGACGCCCG CAAGAAGGGC CAGACCACCA AGAGCCAGGA CCTGGTGGCC GGTGCCGTCC TGGGCGCGGC CCTGCTCGTG CTCACGGGCG CGGGGCCCAT GCTCTACGAC CGCGTGCGCC GCATCGTCAC CACGGCGCTG GAACAGGGCG TGCGCGTGCA CAGCACGCAG GAGCTGCTGG CGCTGCTGTC CTCCATGGCG CTCGACGGCA TGGCGGTTGC CTTCGGCATG GTCATCGTCT CGGTGCTGGT GGCCGTGCTG GCCCTGCTGC CGCAGGTCGG CTTCATGATC ACCTTCGAGC CCCTCACGCC CAAGTTCGAC AGCCTGAACC CGGCCGAAGG ACTCAAGAAG ATGTTCAACG CGCGGTCGCT CGTCGAATTC GCCAAGTCCG TCCTCAAGGC CGTCGTCTTC GGCGCCGTGC TGTGGCACAT CGTGACCGGG CTGGTACCCC TGCTCGTGGG CTCCGTCTAT CTCACGCCCG AGGCCAGCGG ACAGATCGCC TGGAGCGCGC TGCTGAAACT CTTTTCGTTC GCATTCCTCG TCTTCCTGGT CATCGGCCCC CTCGACTTCG GCCTGCAGCA CTGGCTCTTC ATGCGGGACC AGCGCATGAG CAAGGACGAC GTGAAGCGCG AGAACAAGGA CAGCGAAGGC GATCCGCACC TCAAGGGCCA TCTCAAGTCG CTGCGCGAGG AAATGGCGAC ATCGCCGCCG CAGGAACGGG TGCCGGGCGC CACGGTGGTC GTCACCAACC CCACCCATTA CGCCGTGGCG CTGCGCTACG AAGCCGGCGC GACCCCGTTG CCCATCGTCG TGGCCAAGGG CATGGACGAA CAGGCGGCCG TCATCCGCGG CCTGGCCGCG CTGCACCACA TCCCGCTCAT CGCCAATCCG CCGCTGGCGC GCGCCCTGCA CAAGCTGCCG CTGGACCAGC CCATTCCCGA GGAACTGTTC GAAGCCGTCT CCGTCGTGCT GCGCTGGGTG GCCGAACTCG ACCGGCTCGG CGGCGGCAGC CCGCGCTGA
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Protein sequence | MSEKTEEPTA KKLKDARKKG QTTKSQDLVA GAVLGAALLV LTGAGPMLYD RVRRIVTTAL EQGVRVHSTQ ELLALLSSMA LDGMAVAFGM VIVSVLVAVL ALLPQVGFMI TFEPLTPKFD SLNPAEGLKK MFNARSLVEF AKSVLKAVVF GAVLWHIVTG LVPLLVGSVY LTPEASGQIA WSALLKLFSF AFLVFLVIGP LDFGLQHWLF MRDQRMSKDD VKRENKDSEG DPHLKGHLKS LREEMATSPP QERVPGATVV VTNPTHYAVA LRYEAGATPL PIVVAKGMDE QAAVIRGLAA LHHIPLIANP PLARALHKLP LDQPIPEELF EAVSVVLRWV AELDRLGGGS PR
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