| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_2089 |
|---|
| Symbol | |
|---|
| ID | 4663009 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris DP4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008751 |
|---|
| Strand | - |
|---|
| Start bp | 2427957 |
|---|
| End bp | 2430185 |
|---|
| Gene Length | 2229 bp |
|---|
| Protein Length | 742 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639820332 |
|---|
| Product | RecD/TraA family helicase |
|---|
| Protein accession | YP_967532 |
|---|
| Protein GI | 120603132 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | [TIGR01448] helicase, putative, RecD/TraA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.144952 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0798211 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACCG GAAAGACCGC CACCACGGAA GAGCAGACCG CCGAAGCCCT TGAAGAACTG
GAGGGCACCC TCGAGCGCGT CATCTTCCAC AATGCCGAGA ACGGCTACAC GGTGTTCCGC
TTCCAGCCCA AGGGCAAGGG GGGCGATGCC GTCAGCGTGG TGGGGCACAT GGTCGACCCG
CAACCCGGCG TGGGCTTGCT GCTGCGTGGC GGGTGGGTGA ACAACCCCAA GTTCGGTCGT
CAGTTCCGCA TGGAGACCTT CGAGAGTGTT CTGCCCGCCA CCGTAGAGGG CATCCGCCAC
TATCTCGGGT CGGGGCTGAT CAAGGGGGTG GGCGAGACCA TGGCCGCGCG CATCGTCGCC
CGGTTCGGCG AGTCGACCTT CAGCGTGCTG GACGATGCGC CCGACCGCCT CATCGAGGTC
GAAGGCGTGG GGGCCAAGAC GCTGGAACGC ATCAAGACCA GCTGGGCCGA GCACCGGGGC
ATCCGCGACC TCATCATGTT CCTGCAACCG CATGGCGTGA GCACCGCCTA TGCCGTCCGC
ATCTACAGGT ACTACGGCAC GCATGCGCTC ACCGTGGTCC GCGAGAATCC GTATCGCCTC
GCCATGGACA TCCACGGCAT CGGCTTCATC ACCGCCGACG GGGTGGCCAC CAAACTCGGT
TTTTCCAAGG ACAGCCCCCT GCGCGCCGAG GCGGGGGTGC TGTACATGCT AGGTCGTCTG
ACGGAAGACG GGCATGTCTA CTTTCCCTTC GACGGACTGG TGACGCACAC GGGTGACAAA
CTTGACATCC GGTACGACCT CGTCGAGGAC GCCATCCACT CGCTTGAGCG AGAGGAAAGG
GTGGTTCTCG AAGACCTTGG CGAGGGTGTT GGCGTCTTCC TCACCCGGTT CCACCACTAC
GAGACGAAGA TAGCCTACTA CCTGCGGCGC GTACTGGCTT CGCCCAAGGC CGTGCACTTC
GAGAATCCCG ACGCCGTGGT GGACAAGGTA CTGGGCAAGC TCGACATCGC CCTTGCGCCG
GAACAGCTTG AGGCGGTGCG CACCAGCACC CGCAGCAAGG TCATGGTGCT CACCGGGGGG
CCGGGTACGG GCAAGACCAC CATCATCAAC GCCATCATCC GCGTCTTCGC CGAGGTGGGG
GCACGCATCC TGCTTGCCGC GCCCACCGGA CGCGCCGCCA AGCGCATGTC CGAGACAAGC
GGGCGCGAGT CGCGCACCAT CCACCGCCTG CTGGAGTTCA GCCCCAAAGA GGACGGCTTC
GCCCGTAACG AGGACAACCC CCTCGCCTGC GGGCTGCTGG TGGTGGACGA AGCCTCGATG
ATGGACACCA TGCTCATGTA CCACCTGCTG AAGGCCGTGC CGCTAGGGGC GACGCTGCTC
TTCGTGGGTG ATGTGCACCA GTTGCCGTCG GTGGGGCCGG GCAACGTGCT GCGCGACGTC
ATCGTCTCCG GCGTGGTGCC GGTGGTGGAA TTGCGCGAGG TGTTCCGTCA GGCCGCCGAG
AGCGAGATCA TCTGCAACGC CCACCGCATC AATCAGGGCG AGGTTCCGCC TCTCGAATCA
TCGCGCGACA GGCTTTCCGA CTTCTATTTC ATCCGGCAGT CCGACCCCGC CAAGGTCGTG
GAGATGATCC TCGAACTGGT GCGCGACCAC ATCCCCCGTC GCTTCGGGCT GCATCCTGTA
GACGACATCC AGGTGCTCAC CCCCATGCAC AAGGGGCTTG CGGGTGCGGG CAACCTCAAC
CTGCGCCTGC AGGAGGCCCT CAATCCGCAG ACCCTCTGCG TGCAGCGGGG CGAGCGTCAG
TTCCGTCTCG ACGACAAGGT CATGCAGATA CGCAACAACT ACGAGAAGGA TGTCTATAAC
GGCGACATCG GGCGTATCTG CTGCGTCAAC GCCAAGGAGC GCGAGCTCAC CGTCCGCTAC
GATGAACGCA ATGTCATCTA TGCGTGGGAA GAGCTTGACG AGATCGTGCC CGCGTACGCC
ATTTCGGTGC ACAAGTCGCA GGGGTCGGAG TATCCGGCTG TGGTCATTCC GGTGCTCACG
CAGCATTACG TCCTTCTGCA ACGCAATCTC ATCTACACCG GGGTCACGCG GGGCAAACGG
CTTGTGGTGC TCGTCGGCGA ATCGCGTGCG CTTGCCATGG CGGTGAAGAA CAACCGGATG
CAGAAGCGTC ATACATGGCT GGCGCACAGG CTGGCGCAGG GGCTTTCCAC CCCCGGCGCG
CTCCTCTGA
|
|---|
| Protein sequence | MQTGKTATTE EQTAEALEEL EGTLERVIFH NAENGYTVFR FQPKGKGGDA VSVVGHMVDP
QPGVGLLLRG GWVNNPKFGR QFRMETFESV LPATVEGIRH YLGSGLIKGV GETMAARIVA
RFGESTFSVL DDAPDRLIEV EGVGAKTLER IKTSWAEHRG IRDLIMFLQP HGVSTAYAVR
IYRYYGTHAL TVVRENPYRL AMDIHGIGFI TADGVATKLG FSKDSPLRAE AGVLYMLGRL
TEDGHVYFPF DGLVTHTGDK LDIRYDLVED AIHSLEREER VVLEDLGEGV GVFLTRFHHY
ETKIAYYLRR VLASPKAVHF ENPDAVVDKV LGKLDIALAP EQLEAVRTST RSKVMVLTGG
PGTGKTTIIN AIIRVFAEVG ARILLAAPTG RAAKRMSETS GRESRTIHRL LEFSPKEDGF
ARNEDNPLAC GLLVVDEASM MDTMLMYHLL KAVPLGATLL FVGDVHQLPS VGPGNVLRDV
IVSGVVPVVE LREVFRQAAE SEIICNAHRI NQGEVPPLES SRDRLSDFYF IRQSDPAKVV
EMILELVRDH IPRRFGLHPV DDIQVLTPMH KGLAGAGNLN LRLQEALNPQ TLCVQRGERQ
FRLDDKVMQI RNNYEKDVYN GDIGRICCVN AKERELTVRY DERNVIYAWE ELDEIVPAYA
ISVHKSQGSE YPAVVIPVLT QHYVLLQRNL IYTGVTRGKR LVVLVGESRA LAMAVKNNRM
QKRHTWLAHR LAQGLSTPGA LL
|
|---|
| |