| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_1969 |
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| Symbol | |
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| ID | 4663643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris DP4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008751 |
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| Strand | + |
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| Start bp | 2287105 |
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| End bp | 2288730 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639820210 |
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| Product | RluA family pseudouridine synthase |
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| Protein accession | YP_967412 |
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| Protein GI | 120603012 |
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| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0237] Dephospho-CoA kinase
[COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family
[TIGR00152] dephospho-CoA kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.434828 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAACA CACAGACAGC CCTCTCCGGA AAGGAGCAGG CACACAGCCT GACGGTTCCC
GCCGGGATGC GCAACGAACG GCTCGACCGC TTTCTCGGCG AGGCCCTGTC CCATACCGAC
CTTTCACGCG AAAAGATCAA GCGTGCCATA CGCGACGGTC AGTGCACGGT CGACGGCACC
GTCTGCACCA CCCCCAGTAC CCGGCTACGC TCCGGACAAA GGGTGGAACT CGCCATAGCC
CCCGCCGCCA CAGCCGTGGA GCCCGAAGAG GGCGACCTGA CCATCATCCA TCGCGACGAG
CACCTGCTGG TCATCGACAA GCCCGCCGGA CTCACGGTGC ACCCCTGCCC CAGTTGCCCC
GAAGGCACGC TGGTGCATCG TCTGGTACAC CACTTCGACG CGCTGCGCGC GCAAGAAGGG
TTCAGACCCG GCATCGTCCA CCGCATCGAC AAGGATACGA GCGGCCTGCT TCTCGTGGCA
TTGTCCGAAG GTGTGCGCCT GAAGCTGAGC GAGGCTTTCG CCGAGCGCAC CGTCGAAAAG
GAATACCTCG CCCTCGTGCA TGGCGTGCCT CCCGCCACCG GAGAGGTCGA CGCCCCCATC
GGGCGCCACC CCACCCACAA GGTGCGCATG GCGGTGGTGA AGGGCGGCAA ACCCGCCCGT
TCCGAATGGC GCGTGCTCCA TGCCGCCCCG GAAGGACACT ACGCCCTCGT GGCGGTGCGC
ATCCATTCGG GCCGCACGCA CCAGATAAGA GTGCACATGG CCCACGCGGG CTTTCCCCTC
TGGGGCGACC AACTCTACGG CCCCGGCACG CCAGCCCGTC TACGCGAACA GGGCTACGGC
GCAAGGCAGA TGCTGCATGC ATGGCGTCTT GCCTTCACCC ACCCCGTCAC CGGGGAACGG
TTGCGCTTCA CCTGCCCGCC CCCGCAGGAC TTCCCCGACC TCGCTGTCGC CCTCGCGCGC
CGCATGACAC GGGTGGTGAT CACAGGCTCA CCGGGTTGCG GCAAGTCCGC CCTGCTGCAC
TGCCTGCAAG ACCGCGGCGT TCCCACATGG AGTGCCGACG CGGCGGTGGC AGCCCTCTAT
GAACCGGGGG CCGATGGCTG GCACTGCCTG CGCGGACGCT TCGGCGACAG GTTCGTGCCC
GACGACTCCG CACCTGTCGA CCGCAGGGCC CTGCTTGCCG CCATGCAGAC TGAACCGGGG
CTGCGCCGCG AGGTCGAACA GATGGTGCAC CCCCTCGTCA GGCACGACAT GGAGGCCTTT
TACACACGCC ATGCCGAAAC GGGCGCACCC GTGGCCGTGG CGGAAGTCCC CCTGTTCCTC
GAAGCAGGCT GGCGAAGCGG CGACGGTTCA TGCGACGTGC TGGCAGGGGT GGCCTGTCCT
GAACGCGAAC GCATGCACCG CCTGACCGAG ATACGCGGCT GGACACCCGA GACCATCGCC
GCCATGACCG CGTGGCAGTG GCCGGACGAG GACAAGATGC GCGCCTGTGA CATGCTCATC
GACAACGGCG GTTCGCTGGA AGACCTGTCC GGCGAGACGG GCCGTTTCAT CGCCGCACTC
GATGCGCGCC GCGAAGCGGC AGAAGCAAGA CTCGCCGAAG AACTGCACGA CATCTGGAAG
GACTAG
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| Protein sequence | MQNTQTALSG KEQAHSLTVP AGMRNERLDR FLGEALSHTD LSREKIKRAI RDGQCTVDGT
VCTTPSTRLR SGQRVELAIA PAATAVEPEE GDLTIIHRDE HLLVIDKPAG LTVHPCPSCP
EGTLVHRLVH HFDALRAQEG FRPGIVHRID KDTSGLLLVA LSEGVRLKLS EAFAERTVEK
EYLALVHGVP PATGEVDAPI GRHPTHKVRM AVVKGGKPAR SEWRVLHAAP EGHYALVAVR
IHSGRTHQIR VHMAHAGFPL WGDQLYGPGT PARLREQGYG ARQMLHAWRL AFTHPVTGER
LRFTCPPPQD FPDLAVALAR RMTRVVITGS PGCGKSALLH CLQDRGVPTW SADAAVAALY
EPGADGWHCL RGRFGDRFVP DDSAPVDRRA LLAAMQTEPG LRREVEQMVH PLVRHDMEAF
YTRHAETGAP VAVAEVPLFL EAGWRSGDGS CDVLAGVACP ERERMHRLTE IRGWTPETIA
AMTAWQWPDE DKMRACDMLI DNGGSLEDLS GETGRFIAAL DARREAAEAR LAEELHDIWK
D
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