| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_1792 |
|---|
| Symbol | |
|---|
| ID | 4662541 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris DP4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008751 |
|---|
| Strand | + |
|---|
| Start bp | 2093612 |
|---|
| End bp | 2095333 |
|---|
| Gene Length | 1722 bp |
|---|
| Protein Length | 573 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639820033 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_967236 |
|---|
| Protein GI | 120602836 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.608065 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGTAAGC GAGTGAGGTT GGGAGAACTG CTGGTAGAAA CCGGCATCAT AAGCGACGAG
CAGCTCAAGG TGGCCCTGCG CGACCACAAG AAGAGCGGGC TCAGGCTTGG CCAGTTCCTC
ATCAAGACGG GCGTGTGCCG CGAGGGCGAC GTCGTCGCCA CCGTGAGTCG CCAGCTGCGT
ATCGACCGCT ACTCCCCGCA GGACTTTCCG CTGAGTCTCA ACATGGCGGA ACGCCTGCCG
CTTGAGACGG CGCAGAAGTG CAACGCCGTA CCGCTGCAAC AGCACGGGCA TGTGCTTGTG
GTGGCGATGA CCGACCCGCT GGACATCGAC GCCTGCGACA CCATCGAATT CGCCACCAAC
AGCGAAGTCG AGCCTGTCAT CTGCACAGAG CAGGAATTCA ACCAGCTGTT CAGCGCCGTC
TACGGCATGT TCACCAATCT CGACGGTGTG ATAGAGAGCC TCGGCGACCT GCACACCGCC
ACCGCCGCCA AGACCGAGAC CGAAGACCGC GACGTTGCCC TCGAAGAACT CGCCAGTCAG
GCAGACCTCG CCCCCGTGGT GCGGCTGGTC AACTCCATTC TGGCACAGGC GGTGCGCGAG
GGCGCCAGCG ACGTGCACAT CAGCCCCGAG AAAGACTCCA TACAGGTGCG CTTCCGCATC
GACGGCAAGC TGCGCGAAGC CCCCGCCCCG CCCAAGAACG TGGCCCCCGC CATGGTCTCG
CGCCTGAAGA TTCTGGGCAA CATGGACATC GCCGTCACCC GCGTGCCGCA AGACGGTCGC
TTCACCATGA ATCTCGACAA CCGCGAAATC AACGTGCGCG TGTCCAGCAT TCCCACCATC
TACGGTGAGA ACATGGTCTT GCGTCTTCTC GACATGAGCG GACGCGACTA CACCCTCGAC
CAGCTGGGCA TGGAACAGAC CGACCACACC GTCATCAAGC GGGTCATCCA CAAGCCCTAC
GGCATGATAC TCTCCACCGG CCCCACGGGC AGCGGCAAAT CCACCAGCCT GTACGCCATC
CTCAAGAGCA TCAACACGCC GGAAATCAAC ATCATCACCC TTGAAGACCC GGTGGAATAC
CGCATCGGCG GCATCCGTCA GGTGCAACTC AACCGCAAGG CGGGCATGAC CTTCGCCAGC
GGTCTGCGTT CCATCCTGCG TCAGGACCCC GACGTGGTGA TGGTGGGTGA GATACGTGAC
GCCGAAACCG CCTCCATCGC GGTACAGGCG GCCCTCACCG GTCACCTTGT GCTCTCCACC
CTGCACACCA ACGACGCGGC GGGTGCGGTC ACACGCCTCA TCGACATGGG TATCGAACCG
TTTCTCGTCT CATCGGTCAT GCTCGCCTCG TTCGCGCAAC GTCTGGTGCG CCGCGTGTGC
CCCAACTGCG CCGAACCCTA CGACCCGCCC CATGCCGCGC TGGCTGCCTT CGGCATCGAC
CCCGCAGAGG GGCACGACGG CAGGTCGCGC TTCCTCAAGG GGCGCGGCTG CTTCCATTGC
GCCCACACGG GCTACCGCGG GCGTACGGGG CTGTTCGAGA TTCTGCCCAT GGTGCCAGAG
ATACAGGAAC TTGTGGTGCG CCGGTCGTCC ACGCAGGTCA TCGCCAACAC CGCCATCGAA
GCGGGACTGA TGCGTACCCT CGTGCAGGAC GCCGCCCTCA AGGTACGGGC TGGCATCACC
ACCGTCGAAG AGGCGGCGAC CGCCGTCATG TTGCAGGGGT AG
|
|---|
| Protein sequence | MRKRVRLGEL LVETGIISDE QLKVALRDHK KSGLRLGQFL IKTGVCREGD VVATVSRQLR
IDRYSPQDFP LSLNMAERLP LETAQKCNAV PLQQHGHVLV VAMTDPLDID ACDTIEFATN
SEVEPVICTE QEFNQLFSAV YGMFTNLDGV IESLGDLHTA TAAKTETEDR DVALEELASQ
ADLAPVVRLV NSILAQAVRE GASDVHISPE KDSIQVRFRI DGKLREAPAP PKNVAPAMVS
RLKILGNMDI AVTRVPQDGR FTMNLDNREI NVRVSSIPTI YGENMVLRLL DMSGRDYTLD
QLGMEQTDHT VIKRVIHKPY GMILSTGPTG SGKSTSLYAI LKSINTPEIN IITLEDPVEY
RIGGIRQVQL NRKAGMTFAS GLRSILRQDP DVVMVGEIRD AETASIAVQA ALTGHLVLST
LHTNDAAGAV TRLIDMGIEP FLVSSVMLAS FAQRLVRRVC PNCAEPYDPP HAALAAFGID
PAEGHDGRSR FLKGRGCFHC AHTGYRGRTG LFEILPMVPE IQELVVRRSS TQVIANTAIE
AGLMRTLVQD AALKVRAGIT TVEEAATAVM LQG
|
|---|
| |