| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_1507 |
|---|
| Symbol | |
|---|
| ID | 4662181 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris DP4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008751 |
|---|
| Strand | - |
|---|
| Start bp | 1794874 |
|---|
| End bp | 1795464 |
|---|
| Gene Length | 591 bp |
|---|
| Protein Length | 196 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639819740 |
|---|
| Product | OstA family protein |
|---|
| Protein accession | YP_966951 |
|---|
| Protein GI | 120602551 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.167722 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000611674 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGTA GGCTTGTTCC CTTTCTTCTC TCCCTGACCA TGGCTGCTGC CGTGGCGTTT
CCTGTGCCGA CCGCCTGCGC GCAGCCCAAG GCGACCGCGA ATCCCGCCCA GAAATCTGTA
CCGACCACTG TCACCGCGCA GCGCATGCAG TATGATGCGA ACAAGCAGAG TGTCGTGTTC
GAGGGCGATG TATACGTCAA ACGTCCCGAC TTCGAACTGT GGTCGGTGAA GCTGACGCTG
CACCTTGGCA AGTCCAAGGA AGGCAAGAGC GGTGGAGACG TGCCGGGTGG CATGGATGCC
GGTGAGATTG AACGTATCGT CGCCGAGAAG AATGTACGGA TGGTGCGCGA AGGGCGTAAC
GGTACATGTC AGAAGGCCAC CTATACCACC AATGACGGGC TCATGATCAT GGAAGGCTCG
CCGGTCCTCT TCGACAAGGA GAACGTGGTG AAGGGCGAGG TCATCTATTT CTACACTCGC
GAGAATCGAA GCGAAGTGCA TGGTGGCACC TCGCGCCCTG TAGAGGCCGT GTTCACCTCT
TCGTCTTCCG CGTCGCTGCC CGGAGCGGAA AAGGCAAAGG AGTCTGAATG A
|
|---|
| Protein sequence | MASRLVPFLL SLTMAAAVAF PVPTACAQPK ATANPAQKSV PTTVTAQRMQ YDANKQSVVF
EGDVYVKRPD FELWSVKLTL HLGKSKEGKS GGDVPGGMDA GEIERIVAEK NVRMVREGRN
GTCQKATYTT NDGLMIMEGS PVLFDKENVV KGEVIYFYTR ENRSEVHGGT SRPVEAVFTS
SSSASLPGAE KAKESE
|
|---|
| |