| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dvul_1297 |
|---|
| Symbol | dapF |
|---|
| ID | 4662562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris DP4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008751 |
|---|
| Strand | - |
|---|
| Start bp | 1587027 |
|---|
| End bp | 1587875 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639819528 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_966743 |
|---|
| Protein GI | 120602343 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0270469 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.083937 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGCA AGAAGGCCAC TGTGCCCTTC CACAAGCTGC ACGGCTGCGG CAACGATTTC
GTCTTCATCG ACAACCGCCA CCTCAAACTG TCCGTCGAAG CCATGCCCGA CTGGGCCCGC
AGTATCTGCC GACGCGCCTT CGGCGTGGGG GCGGACGGAC TCGTCTTTCT CGATACCGCA
CCGCAAGGGC ATGAAGCCGA CTACATCTGG CATTTCTACA ATGCCGACGG CTCCCGTGCC
GAGATGTGCG GCAACGCCTC GCGCTGTGCC GCCGTCCTTG CCGTCGACCT AGGCTTTGCC
GGACCGCGCC ACGCCTTCGG CACCGATGCC GGCATCGTGC ACGCCGTCGC CGATGTCGAA
GCCGGATACG CCAAGGTTGA ACTCACCCGG CCGCGCGACC TCGCAGCGGG GACGACTCTC
GAACTGGAAG GGACGCCGTT CACAGTGCAT TTCGTCAACA CCGGCGTCCC GCATGCCGTA
GTGTTCTCCG ACTCCGTGGA TGGCCTCGAC CTGCGCAGGC TTGGTGCTGC CCTGCGCTAT
CACCCCCGCT TCTCACCCGC AGGCACCAAC GCCAACTTCG CCTCCATCAT AGACCGCCGC
ACCATTCATC TGCGCACCTA CGAACGCGGC GTCGAAGACG AGACCTACGC CTGCGGAACG
GGTGCCGCAG CCACGGCTTT CATCGCCCAT ACGCTGGGAT TGACTGATGC CAGCGTGGGT
GTAAGAACGT CAGGAGGCGA AGTGCTTGGC ATCGACATCG AAGATGGTTC CATTTTCCTC
TCCGGCAAGG CGGTCAGGGT GTTCTCGGGC GAGATGCACC CTGAAGGGCT GGGGCTGACG
CTGCCCTAG
|
|---|
| Protein sequence | MSGKKATVPF HKLHGCGNDF VFIDNRHLKL SVEAMPDWAR SICRRAFGVG ADGLVFLDTA
PQGHEADYIW HFYNADGSRA EMCGNASRCA AVLAVDLGFA GPRHAFGTDA GIVHAVADVE
AGYAKVELTR PRDLAAGTTL ELEGTPFTVH FVNTGVPHAV VFSDSVDGLD LRRLGAALRY
HPRFSPAGTN ANFASIIDRR TIHLRTYERG VEDETYACGT GAAATAFIAH TLGLTDASVG
VRTSGGEVLG IDIEDGSIFL SGKAVRVFSG EMHPEGLGLT LP
|
|---|
| |