| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maqu_3346 |
|---|
| Symbol | |
|---|
| ID | 4653919 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinobacter aquaeolei VT8 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008740 |
|---|
| Strand | - |
|---|
| Start bp | 3700358 |
|---|
| End bp | 3701281 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639813324 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_960604 |
|---|
| Protein GI | 120556253 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.115237 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGCCGAA GACGCAAAGG CCGTGACGTA AACGGCATCC TGGTGATCGA CAAGCCCCAG
GGCGTTACCT CCAACGGGAT TCTGCAGCAG GTCAAGCGCC TGTATGGTGC GGCGAAGGCT
GGCCATACCG GTGCGCTTGA TCCGCTCGCA ACTGGCGTGC TGCCCCTGTG TTTTGGTGAG
GCCACCAAGT TCTCCCAGAC CATGCTGGAC AGCGACAAGG CGTATATCAC CACCGCACGC
CTGGGCATCC GGACAGAAAC CGGAGACAGC GAAGGGGCTG TGGTGGAGGA AAAGCCGGTT
CCCCAGTTCA GTGAGGATGA GGTGGAGGCC GTGCTGGCCC GGTTCCGTGG CGACATTCAG
CAGGTGCCCT CCATGTACTC GGCTCTGAAG CATCAGGGCA GGCCACTGTA CGAATACGCC
CGCGAGGGCA TCGAAATTGA GCGCCCGGCC AGGCCGGTCA CCATCTACGA GCTCAAGCTC
TTGGCGGTTC GGGAACAGGA GCTGGATCTC GCGGTTACCT GTACCAAGGG TACGTATATC
CGCTCACTGG TTGAGGATAT TGGGGAAGTT CTGGGCTGCG GTGCTCATGT CAGTGCTCTG
CGCCGAACCC TGGCATCCGG TTACACCCTG GCAAATGCCC ACGATGTCAA AGACCTGGAA
GCCATGCGTG AGCGTGGGGA AAGTCTGGAT GGCCTGCTGC TGCCTCCGGA AACCGCCCTC
ACCATGTTTC CCGAGTACCG ATTGTCAGGC GTGCCGCTGG TATCGATCTT GAACGGACAA
CCGGTTAGAA TACCGGGTCA GCCCTTTGAA GGTTTCGTCC GCCTGTATGG CGAGCATTCT
TTCGTGGGGC TGGCAGAAGC ATTGCCGGAA GGCGATGGCA CTCAACTGGT GCCGCGCCGT
CTGGTCAAGA ACAGCAAACG GTAA
|
|---|
| Protein sequence | MSRRRKGRDV NGILVIDKPQ GVTSNGILQQ VKRLYGAAKA GHTGALDPLA TGVLPLCFGE
ATKFSQTMLD SDKAYITTAR LGIRTETGDS EGAVVEEKPV PQFSEDEVEA VLARFRGDIQ
QVPSMYSALK HQGRPLYEYA REGIEIERPA RPVTIYELKL LAVREQELDL AVTCTKGTYI
RSLVEDIGEV LGCGAHVSAL RRTLASGYTL ANAHDVKDLE AMRERGESLD GLLLPPETAL
TMFPEYRLSG VPLVSILNGQ PVRIPGQPFE GFVRLYGEHS FVGLAEALPE GDGTQLVPRR
LVKNSKR
|
|---|
| |