| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maqu_2565 |
|---|
| Symbol | |
|---|
| ID | 4657442 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinobacter aquaeolei VT8 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008740 |
|---|
| Strand | - |
|---|
| Start bp | 2869237 |
|---|
| End bp | 2871300 |
|---|
| Gene Length | 2064 bp |
|---|
| Protein Length | 687 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639812546 |
|---|
| Product | Rhs element Vgr protein |
|---|
| Protein accession | YP_959827 |
|---|
| Protein GI | 120555476 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.125293 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCAGG CAAGCGGATT GCAGTTCACC GCCCGTGTAG GCAAATTCCC CTCGGATCAC
TTTGTCGTTG TCGGCTTCGC GCTGACCGAA CGGCTGTCTG ATCTGTTCCA TGGCCGGTTA
CAGCTGGCCA GCACCGACCC GGATGTGGCC GCCGCCGATG TACTGGAACA GCCGGTAGAC
CTGGTGGTGT GGCAGGATGG CCAGCCCCTG CGCCGGTTCA CCGGCGTGGT GAACGAATTT
ATGCGGGGCG ACACCGGCCA CCGCCGCACC CGCTACGAAG TCGTCATCCA GCCGCCCCTG
TGGCGCCTGG GCCTGATGCA CAACAGCCGC ATCTTCCAGA CCCAGACCAC CGACGCCATC
GTGCGCACCC TGCTCGAAGA GCGGGGCATT GTGGATTCCA TCTTCGACTT CAAACGCCCA
CCGGAAGAAC GGGAATACTG CGTCCAGCAC CGGGAAACCG ACCTGCAGTT CCTGGAACGC
CTGGCCGCCG AAGAAGGCTG GCACTACCGC TACCAGCACG GCAGCGTGGA TGGTGAAGAA
CAACCGGCAC TGATTCTTGC CGACCACCAC GGCGACGCCC CGAAACTGGA GCCGGTTACC
TGCAACACCA AAGCCGGTGG CAGCACAAAG CAGGCCTGCG TGTTCCAGTT CGCCTACGAA
GAACGGGTCA AAGCCGCCTC CGTGGCCATG AAGGACTACA CCTTCAAGAA CCCCGCCTAC
GCCCTGATGC ATGAACAAAA TGCTGGCGGT GTTAACCACC GGGAAGACTA CCAGCACTAC
GACTACCCCG GCCGCTACAA AGCCGACGCC AGCGGCCAGC CGTTCACCCA GAACAAACTG
GATGCCCTCA GAAACGACGC GTCCATGGCC AACGGCAAAA GCAACCGCCT GGACTTCACC
CCCGGCGCCA AAGTGGAACT GCAGGACCAC GACAGCCAGA CCCTGAACCG GGAATGGCTG
CTCACCGCTA TTACCCACAC CGGCAAACAG CCCCAGGCCC TGGAAGAAGA GGGTGGCAGT
GAGCCCACCA GCTACCACAA CACCTTCAGC GCCATCCCGG CCGACAAAAC CTGGCGCCCC
CTGTGTAATC ACAAACCCGT GATGGACGGC CCCCAGATGG CCCTCGTCAC CGGCCCCGAG
GGTGAAGAAA TCCACTGCGA CCAGTATGGC CGGGTGAAAG TAAGATTCCC GTGGGATAGA
TACTCGAAGA ACGACGAACA CAGCAGCGCC TGGTTGCGCG TGGCCCAGGG CTGGGCCGGC
GGCCAATACG GTTTCATGGC CTTGCCAAGG ATTGGTAACG AAGTGATTGT CTCCTTCCTG
GACGGCGACC CTGACCAGCC CATCATCACC GGCCGCACTT ATCACGCCAC CAACACACCG
CCCTACGCGC TGCCGGAACA CAAAACACGC ACCACCCTGA AGACCAAAAC CCACAAGGGT
GAGGGCAGCA ACGAACTGCG GTTTGAGGAT GAAGCCGGCG AAGAACAGAT CTACGTGCAC
GCCCAGAAAG ACCTGGACCT GCTGACGGAA AACAACCGCA CCGAAGTCAT CAGGAACGAC
AGCCACCTGA CGGTGGAGAA CCACCAGTTC AGCCACATCA AAGCGGCGGA CCATTGCACC
ACCGACGGTG AAAGCCGGCT GTCCGTTGGC GCAGACTGCA GTCAGACCGT GGGCGGCACC
TACCATCAGA AAACCGCCCG CACCATGGCC TCAGAAGCCG GCACCGAAGT GCATCACAAG
GCCGGTGCCA AGGTGGTGCT GGATGCCGGG GCAGAGCTGA CGATTTCCGG GGGTGGAAGC
TTTATCAAGC TGGACCCCAG TGGGGTTACG TTGAGCGGGC CGGGGATCAA GATTAATTCC
GGGGGCAGCC CGGGGAGTGG TTCAGGGCAG GGGGCCGTGA TTCCGGGTGT TCCTCAGGTG
TTGGAAGCCG AGTCTGCAAA GGTGATTGAT CCTGTTGAAC TGGCGGAAGT GCCGCTCACC
AGAGCCCAGT ATCAAAACAT GATGGCGGAT GCTCCGTTCT GTGAAGAGTG CGTTGCCTGC
CAGGACGGAG TGTGCAATGT CTGA
|
|---|
| Protein sequence | MPQASGLQFT ARVGKFPSDH FVVVGFALTE RLSDLFHGRL QLASTDPDVA AADVLEQPVD
LVVWQDGQPL RRFTGVVNEF MRGDTGHRRT RYEVVIQPPL WRLGLMHNSR IFQTQTTDAI
VRTLLEERGI VDSIFDFKRP PEEREYCVQH RETDLQFLER LAAEEGWHYR YQHGSVDGEE
QPALILADHH GDAPKLEPVT CNTKAGGSTK QACVFQFAYE ERVKAASVAM KDYTFKNPAY
ALMHEQNAGG VNHREDYQHY DYPGRYKADA SGQPFTQNKL DALRNDASMA NGKSNRLDFT
PGAKVELQDH DSQTLNREWL LTAITHTGKQ PQALEEEGGS EPTSYHNTFS AIPADKTWRP
LCNHKPVMDG PQMALVTGPE GEEIHCDQYG RVKVRFPWDR YSKNDEHSSA WLRVAQGWAG
GQYGFMALPR IGNEVIVSFL DGDPDQPIIT GRTYHATNTP PYALPEHKTR TTLKTKTHKG
EGSNELRFED EAGEEQIYVH AQKDLDLLTE NNRTEVIRND SHLTVENHQF SHIKAADHCT
TDGESRLSVG ADCSQTVGGT YHQKTARTMA SEAGTEVHHK AGAKVVLDAG AELTISGGGS
FIKLDPSGVT LSGPGIKINS GGSPGSGSGQ GAVIPGVPQV LEAESAKVID PVELAEVPLT
RAQYQNMMAD APFCEECVAC QDGVCNV
|
|---|
| |