| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maqu_0865 |
|---|
| Symbol | ispH |
|---|
| ID | 4655099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinobacter aquaeolei VT8 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008740 |
|---|
| Strand | + |
|---|
| Start bp | 983788 |
|---|
| End bp | 984738 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639810823 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_958148 |
|---|
| Protein GI | 120553797 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATCC GACTCGCTAA CCCCCGTGGC TTCTGTGCCG GCGTAGACCG AGCCATAGAA
ATTGTAAACC GCGCGCTGGA CGTGTTCGGA GCACCCATCT ACGTGCGCCA CGAAGTGGTT
CACAACAAGT TCGTGGTCGA CAACCTGCGC AACCGGGGCG CGATCTTTGT CGACGAGTTG
GGCGAAGTGC CCGACGACAA ACTGGTGATC TTCAGTGCCC ACGGCGTCTC CCAGGCGGTA
CAGAACGAAG CTGCCCGCCG CGGCCTGAAA GTGTTCGATG CCACCTGCCC GCTGGTCACC
AAGGTACATA TGGAAGTGAT GCGCTACAGC CGCGACGGCC GCGAGTGCAT CCTGATTGGC
CACCATGGAC ACCCGGAAGT GGAAGGCACC ATGGGCCAGT ACGATCACAG CAACGGCGGC
GACATCTACC TGGTAGAAGA TGAAGCCGAC GTGCAGAAGC TGGAAGTGAA AGACCCCAGC
CGCTTGTCCT TCGTTACCCA GACCACCCTG TCCATGGACG ACACCGCCCG TGTCATCGAC
GCCCTGCGCG CCAAATTCCC GCAAATAGAA GGCCCCCGCA AAGACGACAT CTGCTACGCC
ACCCAGAACC GGCAGGATGC GGTCAAACAA CTGGCCGGCG ACTGCGATAT CATGCTGGTA
GTAGGCAGCC CCAACAGCTC GAACTCCAAC CGCCTGCGGG AACTGGCCGA ACGCATGGGC
ACCCCGGCCT ATCTGATCGA TGAAGCCGCC CAGATAGACC CCGCATGGCT GTACGGTAAA
AAGGCAATCG GCGTAACGGC CGGTGCGTCT GCCCCTGAGG TGCTGGTCGC CGATGTGATC
AAGCGCCTGA AAGCCCTGGG GGGCGAAGAG CCGGTGGAAG TGTCGGGCCG TGAAGAAAGC
ATCGTCTTTT CCATGCCCAA AGAACTTCGC ATCGACGCGG TGGAATTGTG A
|
|---|
| Protein sequence | MQIRLANPRG FCAGVDRAIE IVNRALDVFG APIYVRHEVV HNKFVVDNLR NRGAIFVDEL
GEVPDDKLVI FSAHGVSQAV QNEAARRGLK VFDATCPLVT KVHMEVMRYS RDGRECILIG
HHGHPEVEGT MGQYDHSNGG DIYLVEDEAD VQKLEVKDPS RLSFVTQTTL SMDDTARVID
ALRAKFPQIE GPRKDDICYA TQNRQDAVKQ LAGDCDIMLV VGSPNSSNSN RLRELAERMG
TPAYLIDEAA QIDPAWLYGK KAIGVTAGAS APEVLVADVI KRLKALGGEE PVEVSGREES
IVFSMPKELR IDAVEL
|
|---|
| |