| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maqu_0495 |
|---|
| Symbol | |
|---|
| ID | 4655056 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinobacter aquaeolei VT8 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008740 |
|---|
| Strand | + |
|---|
| Start bp | 563074 |
|---|
| End bp | 564000 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 639810447 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_957783 |
|---|
| Protein GI | 120553432 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCAGC AACGACGTGG CCAGGGTCCG GTCCTGCGCT TTACCAAGAT GCACGGGCTG
GGTAACGACT TCATGGTGGT CGACGCCATC AGCCAGCCAT TCCGGCTGGC CCCGGACACC
ATCCGGGAAC TGGCGGATCG CAATTTCGGG ATCGGTTTTG ATCAGCTGCT GGTGGTGGAG
CCGCCGGGGC TGCCGGATGT GGATTTTCGC TACCGTATTT TCAATGCCGA TGGCTCGGAG
GTGGAACAGT GCGGCAACGG CGCCCGCTGC TTCGCCCGCT TTGTGCGCGA TCAGCGCCTG
ACCAACAAGC GTGTTATCCG GGTCCAGACT GCCAAGGGTG TGATTGAGCT CAAAGTGGGT
CGGGATGGCC TGGTAGCGGT CAACATGGGG GTGCCGGAGC TCAACCCCCC CGCGATCCCC
TTTGCGGCAG ATCAGCGCAA GGATGTGTAT ACCGTCGACG TGAATGGTCA GACGGTCGAG
CTGTCAGCCA TCTCCATGGG TAATCCCCAC GGAGTGCTGG TGGTGGACAA TGTCGATACG
GCGCCGGTGG AAAGCCTTGG CCCGCAGTTG GAAAAGCATC CCCGGTTTCC GGCCAGGGCC
AACATTGGTT TTCTGCAGGT GATTGATCGC CGCCATGCCC GGTTGCGGGT GTTTGAACGG
GGCTCCGGCG AAACACTCGC CTGCGGCAGC GGTGCCTGTG CAGCGGTGGT GGCCGGTTGT
CTCCGCGGCT TGCTGGACAG CCGGGTCGAA GTCGAGTTGC GTGGCGGCAG GCTGGTCATT
GAATGGCAGG GGGAAGATAC CCCTGTTATG ATGGAAGGTC CTGCAACCAC GGTATTTGAA
GGCCAGTTGC GGCTGCCTGG CGAACCCCAG CCCCGGCGCC GCAGGAGTGC CCGCCCGAAC
ACCCGACCTC ATAAAAACGG GGCCTGA
|
|---|
| Protein sequence | MSQQRRGQGP VLRFTKMHGL GNDFMVVDAI SQPFRLAPDT IRELADRNFG IGFDQLLVVE
PPGLPDVDFR YRIFNADGSE VEQCGNGARC FARFVRDQRL TNKRVIRVQT AKGVIELKVG
RDGLVAVNMG VPELNPPAIP FAADQRKDVY TVDVNGQTVE LSAISMGNPH GVLVVDNVDT
APVESLGPQL EKHPRFPARA NIGFLQVIDR RHARLRVFER GSGETLACGS GACAAVVAGC
LRGLLDSRVE VELRGGRLVI EWQGEDTPVM MEGPATTVFE GQLRLPGEPQ PRRRRSARPN
TRPHKNGA
|
|---|
| |