| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Maqu_0247 |
|---|
| Symbol | |
|---|
| ID | 4656870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Marinobacter aquaeolei VT8 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008740 |
|---|
| Strand | - |
|---|
| Start bp | 286990 |
|---|
| End bp | 289662 |
|---|
| Gene Length | 2673 bp |
|---|
| Protein Length | 890 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639810203 |
|---|
| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_957540 |
|---|
| Protein GI | 120553189 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3437] Response regulator containing a CheY-like receiver domain and an HD-GYP domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGGA TACTTATTGT TGATGATCAT GAACCCAACC GGGAGCTGGT TGCTTCCCTG
GCGGGCTATC TGGGCCACGA GATTCTGGAA GCACCGGACG GCGAAAAAGC CCTGGCCGTC
GTCCGGCGAC ACCGCCCGGA CCTGGTGATC TGCGATCTGT TGATGCCAGT GATGGATGGC
TATGAATTTG TGCGTCAGGT ACGACAGGAT CCGCGCATTG CCGACACCGA AATCATGTTC
TACACCGCCA ACTATCGTGA AGATGAGGCA CGCACACTGG CCAGCCAGTT GGGAGTTCAC
CGAATCATCT TCAAACCCTG TGTTCCCGAG GACGTGCTCG AAGCCATAGA AAGCGCACTT
CGCCCGATAG ATTCTCCGCC AGAGCCCACT CAGGCGGTGG ATGAAAACCG CTTCGACGCC
GAGCATACCC GAGTCCTGAC CGACACGCTG TCCCGCAAAA GCGATGAACT GGAAAAGGCG
AATCGACGGC TCGCCGCCCT CACCGAAATC AATCTTCAGC TTTCGGGAAT GCGCGATGCC
GGTCGTATGC TGGAGACGAT CTGTCGCGAT GCCCGCGCCC TGGTAGGCGC CAGCTATGGC
ATTCTGTGTG TCAACGAGAG CCACAACGGC GACCAGCAGA TTCGGCTTTT CCTCAGTGGC
TTCAGTCCCG AACTGAAACA ACAACTCGCC TGCCCGGGAA TCAATGACGG GGTTCCCGGT
GCCGTGTTGC GGGACAGACT CTCGAAAAGA CTCCATGCCG GGGGCCATCA GGCACTGAAA
ATCGGTCTGC CAGAAGGCTA TCCACCCGTT CAATCCTGCG TGGTTTCGCC CATCATGTCG
GCGACGGAGG TTTACGGCTG GGTCTGCCTG ATCAATCGCC TGGACGACGA GCCATTCAGT
GAGGAAGACG AATGGCTCTG CAGCTCTCAC GCAGCCATGG CTGGCCGGGT TTATGAGAAC
CGCAGCCTGT ATCTGCAACT GGAGAGCCGG GCCCGCAAGC TGCAACTGTA TGACCGGGCA
ATCGAAGAAA GCAGCAACGG CATTGTGATC TGTCTGGCCG ATAAAACACG GGATAACCCG
GTCATCTACG CCAACCGCGC CTTCAGCATC ATGACCGGTT ACAGCCACGA CGAGATCATC
GGTCTGAGCC CCCGCTTCCT GCTGGCCAAC GATCTGGCCC AGCCGGGACT GGAAAGGCTG
CGCAACTGCA TGCGCCATGG CGGCTCTGCC CGAGCCATCC TCAGAAACTA CCGGAAAGAC
GGCAGTCTGT TCTGGAATGA AGTAGCGCTT GCCGCAGTCC ATAACGAACA CGGCGAGATT
GCGCATTTCA TCAGCGTTTT CAATGATGTG ACAGATCGGA AACGGTATGA GGCGGCGCTG
GAGTATCAGG CCAATCACGA TGACCTGACC GGGCTGCCAA ACCGTAACCT GCTTCGGGAC
CGGCTGGAAC ATGCCATTAC CAAGGCGACA CGCGAGCACA CCAAGCTCGC CGTGCTGCTG
CTGGATCTGG ACCAGTTCAA ACGCGTGAAT GACGGTCTGG GCCACAAAAT CGGCGATACC
CTGATTCAAC GGGTTGCCTC CCGAATGAGT CAGTGTGTTC GTGACAGCGA CACGGTGGCC
CGCCTCGGGG GCGATGAATT CATGATTCTC AGTACCGATA TCCGCGATGA GCGGGCGGCG
GCCACCCTTG CGCAGAAGCT GCTTCGGCAG TTCCGACAGA AGGTAGCCAT TAACGGCCAT
GAAATCATCG CCTCCGCCAG CATCGGCATC GCCATGTTTC CGAAGGATGG CGATAACGGC
GATGAATTAT TCCGGAATGC CGATACCGCC ATGTACCGGG CGAAGGACGT CGGCAGAAAT
GGCTTTCAGT TCTATTCTGC GGAGATGAAT AACCGCATGC GGGAGCGGCT CTATCTGGAA
CAGTCGCTCC GCAATGCCAT TGGCCTGCAT CAACTGTCAC TCTGGTATCA GCCGAAACTG
GATCTTGCCA GTGGCTCGGT CAAAAGCGCA GAAGCCCTGA TTCGATGGCG CCACCCCCAA
TTGGGCATGA TTTCTCCCGG GGACTTTATT CCCATTGCCG AAGAAACCGG TTTAATACTG
CCCATCGGCG CCTGGGTGAT TGAAGAAGCC TCTCGCCAGC TCGCCAAATG GCGTGATCAG
GAGAACCAGG ACATTCGGGT TGCCATCAAC ATCTCGGCCT ATCAACTCAG TCATGGCAAA
CTCACGGATC AGGTTATCCA GGCCCTGGAC AGCCTGGGAC TGGATCCGCA GTCACTGACC
ATTGAGGTGA CCGAAACCGC CATCATGCCC CAGATGGACA AGGCCGTTTG CGAGCTTCAG
TCACTCAGGG AAATGGGCAT TCGCGTCGCT CTCGATGATT TCGGCACCGG CTACTCAAGC
CTGACTTACC TGAAACGTTT TCCGATCGAT ATCCTGAAAA TTGACCGGAG TTTCGTCTCC
GACATCGCCG ATGACGAGGA AAGCGGGGCC ATCGTCAAAA CCATCATCAA CCTGGCCCAC
AACCTCAACA TGACCGTGGT GGCGGAAGGT GTGGAAACAG AGGCGCAACT GGAATTTCTG
AGGACAAACG GATGCGACGA GGTACAGGGT TACTATTTCT GCAAACCCCT GCCGTCGGAA
GAGTGCCTCG AGTTCCTGCG CTGCCGGCGT TAG
|
|---|
| Protein sequence | MARILIVDDH EPNRELVASL AGYLGHEILE APDGEKALAV VRRHRPDLVI CDLLMPVMDG
YEFVRQVRQD PRIADTEIMF YTANYREDEA RTLASQLGVH RIIFKPCVPE DVLEAIESAL
RPIDSPPEPT QAVDENRFDA EHTRVLTDTL SRKSDELEKA NRRLAALTEI NLQLSGMRDA
GRMLETICRD ARALVGASYG ILCVNESHNG DQQIRLFLSG FSPELKQQLA CPGINDGVPG
AVLRDRLSKR LHAGGHQALK IGLPEGYPPV QSCVVSPIMS ATEVYGWVCL INRLDDEPFS
EEDEWLCSSH AAMAGRVYEN RSLYLQLESR ARKLQLYDRA IEESSNGIVI CLADKTRDNP
VIYANRAFSI MTGYSHDEII GLSPRFLLAN DLAQPGLERL RNCMRHGGSA RAILRNYRKD
GSLFWNEVAL AAVHNEHGEI AHFISVFNDV TDRKRYEAAL EYQANHDDLT GLPNRNLLRD
RLEHAITKAT REHTKLAVLL LDLDQFKRVN DGLGHKIGDT LIQRVASRMS QCVRDSDTVA
RLGGDEFMIL STDIRDERAA ATLAQKLLRQ FRQKVAINGH EIIASASIGI AMFPKDGDNG
DELFRNADTA MYRAKDVGRN GFQFYSAEMN NRMRERLYLE QSLRNAIGLH QLSLWYQPKL
DLASGSVKSA EALIRWRHPQ LGMISPGDFI PIAEETGLIL PIGAWVIEEA SRQLAKWRDQ
ENQDIRVAIN ISAYQLSHGK LTDQVIQALD SLGLDPQSLT IEVTETAIMP QMDKAVCELQ
SLREMGIRVA LDDFGTGYSS LTYLKRFPID ILKIDRSFVS DIADDEESGA IVKTIINLAH
NLNMTVVAEG VETEAQLEFL RTNGCDEVQG YYFCKPLPSE ECLEFLRCRR
|
|---|
| |