Gene Mvan_3276 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMvan_3276 
Symbol 
ID4644493 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMycobacterium vanbaalenii PYR-1 
KingdomBacteria 
Replicon accessionNC_008726 
Strand
Start bp3484547 
End bp3485290 
Gene Length744 bp 
Protein Length247 aa 
Translation table11 
GC content66% 
IMG OID639806751 
Productpseudouridine synthase 
Protein accessionYP_954080 
Protein GI120404251 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0129049 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGACA ACGACGGAAT CCGACTTCAG AAAGTGTTGT CGCAGGCGGG AATTGCGTCT 
CGGCGAGTCG CGGAGAAGAT GATCCGGGAC GGCCGGGTCG AGGTGGACGG CCGGATCGTC
ACCGAGTTGG GCACCCGGGT GGATCCGGCG GCCTCGGTGA TCCGGGTGGA CGGTGCCCGG
ATCACGGTCG ACGACACCCT CGTGTACCTG GCCATCAACA AACCGCGCGG GATGCACTCG
ACGATGTCCG ACGACCGCGG CCGGCCGTGT GTCGGCGACC TTGTGGAGCA CCGGGTTCGC
GGCAACAAGA AGCTGTTTCA CGTCGGGCGC CTGGACGCAG ACACCGAGGG GCTGCTGTTG
CTGACCAACG ACGGGGAATT GGCGCACCGG TTGATGCACC CGTCATTCGA GGTGCCCAAG
TCCTACGTCG CGACCGTGCT CGGTTCGGTG CCCAAGGGGT TGGGCCGCAA GCTGCGTGAG
GGAGTCGAGC TGGAGGACGG ACCCGTCCAG GTCGACGATT TTGCCGTCGT CGACACGACG
CCGGGCCGGA CGCTGGTGCG GGTGACCCTG CACGAGGGCC GCAAACACAT CGTGCGGCGG
CTGCTGGCCG AAGTCGGGTT CCCGGTGCAG GAATTGGTGC GCACCGACAT CGGCACGGTG
TCGTTGGGCG ATCAGCGCCC CGGCAGCATC CGGGTGTTGA CACAGAAGGA AATCGGCGAA
CTGTACAAGG CGGTGGGCCT GTGA
 
Protein sequence
MTDNDGIRLQ KVLSQAGIAS RRVAEKMIRD GRVEVDGRIV TELGTRVDPA ASVIRVDGAR 
ITVDDTLVYL AINKPRGMHS TMSDDRGRPC VGDLVEHRVR GNKKLFHVGR LDADTEGLLL
LTNDGELAHR LMHPSFEVPK SYVATVLGSV PKGLGRKLRE GVELEDGPVQ VDDFAVVDTT
PGRTLVRVTL HEGRKHIVRR LLAEVGFPVQ ELVRTDIGTV SLGDQRPGSI RVLTQKEIGE
LYKAVGL