Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_3360 |
Symbol | |
ID | 4625705 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | + |
Start bp | 4151835 |
End bp | 4153169 |
Gene Length | 1335 bp |
Protein Length | 444 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 639798472 |
Product | type I secretion outer membrane protein, TolC family protein |
Protein accession | YP_944645 |
Protein GI | 119946965 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.21716 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.12144 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCATAA AAAAATTTAC TCTCGCGGCA TTGTTTGCCG TGACTAGCTA CAGTTACTCT GTTCAAGCTG ATACGTTATT ACAAGTTTAC CAAACCGCCA AAATCAAAGA TCCTATTATC CTCAAAAGCA AAGCGCAGTA TGATGCCTAT TTAGAAAAAG TAACACAAGC AAATGCCGCA TTATTACCAC AAATAGGCTT TGGACTGGAA ACAAATTATA CCAATTACAA TAATGATAAT TTAAGTAATT CAAACGTTGG GGCCAATATT GGATTAAGCC AATCACTTTA TAATGGTTCA CATTGGCAAC AATTAAGCAT TGCTGAAAAA CAAGCAACAC AATATGCCAG CATTTATGGT TTAGCTGCGC AGGATTTATT ATTTAGAGCC TCAACGGCTT ACTTTAATGT CTTACGTGCA GATGAAGCGG TAAAATCAAT TAAAGCAAAT AAACGCGCGG TTGAACGCCA ACTTGAACAG ACTAAACAGC GTTTTGAAGT GGGTTTAATT GCGATCACCG ATGTACATGA AGCACAAGCT GCCTACGACA GAACAACAGC CGATGAAATT ATTGCAGAAA ATAATCTAGC TAATACTTAT TATGCATTGC GCGAATTAAC CGGGGAAGAT GTCCTCAAGG TGTCGTATTT AAATACGAAC ACTTTTAGCG CACAGAAAAT TGAAGGTGGT GTGTCTCTCT GGCGCAGCAA AGCATTAGAG TACAACTTAG CCTTGCATAG CAAACGCATT GTTAAAGAAT TGGCTAAAAT GCAAATCGAT TTAGCCAAAA CTGGCCATAA ACCCACCTTA GATTTAACCG CTGGAGTAGG TTACAAAAAC ACATCCTATG ATAATAGTAG CGTTAGTGAT ACAGACATTA GTAACGGCAC TATCGGACTA AGCTTAAATG TGCCGATTTA CACCGGGGGC AGTATTAACT CACAGGTCAA ACAAGCACAA TATAATTATG TTTATGCCAG TGAAGATTTA GTACAAACAT TCCGTAGCAC AGAAGCACAG ATCAATAGAG GTTATAACAA TGTTGGCGCA TCAATCAGCT CTCTTCGTGC TTATGAACAA ACAGTGCTCT CTTCACGCAG TGCCCTGGAT GCAACAAAAG CGGGTTTTGA AGTGGGTACA CGTACTATCG TTGATGTATT AGATGCGACA CGCGCGTTAT ACGAATCTGA AAATCTATTA GCTAATGCAC GTTATGACTA TATTATCAAT ATGTTACAGC TTAAACTTTC TGCAGGTACT CTGGCCGAAC AAGATATTAT CGATATTTCT AACAATTTAA TTGAAGTCGA TCCAACAGTG TTGGAAAAAT ATTAA
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Protein sequence | MAIKKFTLAA LFAVTSYSYS VQADTLLQVY QTAKIKDPII LKSKAQYDAY LEKVTQANAA LLPQIGFGLE TNYTNYNNDN LSNSNVGANI GLSQSLYNGS HWQQLSIAEK QATQYASIYG LAAQDLLFRA STAYFNVLRA DEAVKSIKAN KRAVERQLEQ TKQRFEVGLI AITDVHEAQA AYDRTTADEI IAENNLANTY YALRELTGED VLKVSYLNTN TFSAQKIEGG VSLWRSKALE YNLALHSKRI VKELAKMQID LAKTGHKPTL DLTAGVGYKN TSYDNSSVSD TDISNGTIGL SLNVPIYTGG SINSQVKQAQ YNYVYASEDL VQTFRSTEAQ INRGYNNVGA SISSLRAYEQ TVLSSRSALD ATKAGFEVGT RTIVDVLDAT RALYESENLL ANARYDYIIN MLQLKLSAGT LAEQDIIDIS NNLIEVDPTV LEKY
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