Gene Ping_3360 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_3360 
Symbol 
ID4625705 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp4151835 
End bp4153169 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content39% 
IMG OID639798472 
Producttype I secretion outer membrane protein, TolC family protein 
Protein accessionYP_944645 
Protein GI119946965 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.21716 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.12144 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCATAA AAAAATTTAC TCTCGCGGCA TTGTTTGCCG TGACTAGCTA CAGTTACTCT 
GTTCAAGCTG ATACGTTATT ACAAGTTTAC CAAACCGCCA AAATCAAAGA TCCTATTATC
CTCAAAAGCA AAGCGCAGTA TGATGCCTAT TTAGAAAAAG TAACACAAGC AAATGCCGCA
TTATTACCAC AAATAGGCTT TGGACTGGAA ACAAATTATA CCAATTACAA TAATGATAAT
TTAAGTAATT CAAACGTTGG GGCCAATATT GGATTAAGCC AATCACTTTA TAATGGTTCA
CATTGGCAAC AATTAAGCAT TGCTGAAAAA CAAGCAACAC AATATGCCAG CATTTATGGT
TTAGCTGCGC AGGATTTATT ATTTAGAGCC TCAACGGCTT ACTTTAATGT CTTACGTGCA
GATGAAGCGG TAAAATCAAT TAAAGCAAAT AAACGCGCGG TTGAACGCCA ACTTGAACAG
ACTAAACAGC GTTTTGAAGT GGGTTTAATT GCGATCACCG ATGTACATGA AGCACAAGCT
GCCTACGACA GAACAACAGC CGATGAAATT ATTGCAGAAA ATAATCTAGC TAATACTTAT
TATGCATTGC GCGAATTAAC CGGGGAAGAT GTCCTCAAGG TGTCGTATTT AAATACGAAC
ACTTTTAGCG CACAGAAAAT TGAAGGTGGT GTGTCTCTCT GGCGCAGCAA AGCATTAGAG
TACAACTTAG CCTTGCATAG CAAACGCATT GTTAAAGAAT TGGCTAAAAT GCAAATCGAT
TTAGCCAAAA CTGGCCATAA ACCCACCTTA GATTTAACCG CTGGAGTAGG TTACAAAAAC
ACATCCTATG ATAATAGTAG CGTTAGTGAT ACAGACATTA GTAACGGCAC TATCGGACTA
AGCTTAAATG TGCCGATTTA CACCGGGGGC AGTATTAACT CACAGGTCAA ACAAGCACAA
TATAATTATG TTTATGCCAG TGAAGATTTA GTACAAACAT TCCGTAGCAC AGAAGCACAG
ATCAATAGAG GTTATAACAA TGTTGGCGCA TCAATCAGCT CTCTTCGTGC TTATGAACAA
ACAGTGCTCT CTTCACGCAG TGCCCTGGAT GCAACAAAAG CGGGTTTTGA AGTGGGTACA
CGTACTATCG TTGATGTATT AGATGCGACA CGCGCGTTAT ACGAATCTGA AAATCTATTA
GCTAATGCAC GTTATGACTA TATTATCAAT ATGTTACAGC TTAAACTTTC TGCAGGTACT
CTGGCCGAAC AAGATATTAT CGATATTTCT AACAATTTAA TTGAAGTCGA TCCAACAGTG
TTGGAAAAAT ATTAA
 
Protein sequence
MAIKKFTLAA LFAVTSYSYS VQADTLLQVY QTAKIKDPII LKSKAQYDAY LEKVTQANAA 
LLPQIGFGLE TNYTNYNNDN LSNSNVGANI GLSQSLYNGS HWQQLSIAEK QATQYASIYG
LAAQDLLFRA STAYFNVLRA DEAVKSIKAN KRAVERQLEQ TKQRFEVGLI AITDVHEAQA
AYDRTTADEI IAENNLANTY YALRELTGED VLKVSYLNTN TFSAQKIEGG VSLWRSKALE
YNLALHSKRI VKELAKMQID LAKTGHKPTL DLTAGVGYKN TSYDNSSVSD TDISNGTIGL
SLNVPIYTGG SINSQVKQAQ YNYVYASEDL VQTFRSTEAQ INRGYNNVGA SISSLRAYEQ
TVLSSRSALD ATKAGFEVGT RTIVDVLDAT RALYESENLL ANARYDYIIN MLQLKLSAGT
LAEQDIIDIS NNLIEVDPTV LEKY