| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_3222 |
|---|
| Symbol | |
|---|
| ID | 4624655 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 3977474 |
|---|
| End bp | 3978538 |
|---|
| Gene Length | 1065 bp |
|---|
| Protein Length | 354 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 639798329 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_944508 |
|---|
| Protein GI | 119946828 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01463] methyltransferase, MtaA/CmuA family
[TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.234724 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAAT TAAAAAATGA TCGTTATCTT CGCGCTTTAT TAAAGCAAGA CGTTGATAAA
ACACCAGTAT GGATGATGCG TCAAGCGGGT AGATATTTAC CTGAATATAA AAAGGTACGC
GCGCAAGCCG GAGATTTTAT GTCTTTGTGC CGCAATGCAG ATTTGGCCTG TGAAGTAACC
TTACAACCTT TACGCAGATT TGACCTTGAT GCCGCTATCT TATTTTCAGA TATTCTTACT
ATCCCAGATG CAATGGGACT GGGTCTTTAT TTTGCAGAAG GGGAAGGGCC TAAGCTTAAA
CGCCCGATAA CATGTAAAAA AGACGTTGAT AATTTAATCA TGCCGGATCC CGAAGGCGAA
CTGCAATATG TTATGAATGC GGTACGCACG ATACGCCGCG AGTTAAAAGG CTCCGTTCCA
TTAATTGGGT TCGCCGGTAG CCCATGGACA TTAGCGACTT ATATGGTTGA AGGGGGGAGT
TCAAAGGCTT TCACCAAGAT CAAAAAAATG GCCTTTTGTG AGCCTCAACT ATTACATACT
TTATTAGATA AACTTGCTGA TTCTGTGATT GATTATTTAA ATGCACAGAT AGCTGCAGGC
GCGCAATCGG TAATGGTCTT CGATACTTGG GGTGGCGTGT TATCTCCTCG AGACTACAAA
GATTTTTCAT TACAGTATAT GACCAAAATT GTTGCCGGAT TACAGCGCTC CTATGAAGGT
CAAAAAATTC CAGTCACATT GTTTACTAAA AATGGCGGAC AGTGGTTAGA AGCGATTGCC
GATACGGGTT GTGATGCGAT TGGACTCGAT TGGACGATTG ATATGGCAAG CGCAAAAGCG
CGTGTTGGAG ATCGTGTGGT GTTACAGGGT AATATGGATC CTTCTATGTT ATATGCAACG
CCAGAGCGAA TCCGTCAAGA GGTTGCGACC ATATTAGCGA GTTTTGGTAA AGGAAACGGA
CATGTCTTTA ACCTAGGCCA CGGCATTCAT CTAGATGTAC CGCCTGAGAA TGGCAAAGTA
TTTGTTGATG CAGTACACGA GTTGAGTATG CCGTATCACG TTTAA
|
|---|
| Protein sequence | MTELKNDRYL RALLKQDVDK TPVWMMRQAG RYLPEYKKVR AQAGDFMSLC RNADLACEVT
LQPLRRFDLD AAILFSDILT IPDAMGLGLY FAEGEGPKLK RPITCKKDVD NLIMPDPEGE
LQYVMNAVRT IRRELKGSVP LIGFAGSPWT LATYMVEGGS SKAFTKIKKM AFCEPQLLHT
LLDKLADSVI DYLNAQIAAG AQSVMVFDTW GGVLSPRDYK DFSLQYMTKI VAGLQRSYEG
QKIPVTLFTK NGGQWLEAIA DTGCDAIGLD WTIDMASAKA RVGDRVVLQG NMDPSMLYAT
PERIRQEVAT ILASFGKGNG HVFNLGHGIH LDVPPENGKV FVDAVHELSM PYHV
|
|---|
| |