Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_3215 |
Symbol | |
ID | 4624648 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | + |
Start bp | 3970912 |
End bp | 3971871 |
Gene Length | 960 bp |
Protein Length | 319 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 639798322 |
Product | tRNA-dihydrouridine synthase |
Protein accession | YP_944501 |
Protein GI | 119946821 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0042] tRNA-dihydrouridine synthase |
TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.618108 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCATCG GGCAGCATCA ACTAGATAAC AAAATCATTT TAGCACCCAT GGCAGGGGTA ACTGATCGTC CCTTCCGTGA GCTTTGCCGA AAACAAGGTG CAGGACTTGC AGTGTCCGAG ATGCTGTCAT CGAATCCGCG TGTATGGAAC AGCAGGAAGT CGAAGTTAAG AATGGACTAC CATAATGAAT CTGGCATCAG ATCAGTGCAA ATTGCTGGCT CAGAGCCTTT GGCAATGGCG ACAGCAGCAC AGTTGAGTGT GCAACAAGGC GCTCAGATTA TTGATATCAA TATGGGTTGT CCCGCTAAAA AAGTGAATAA GAAAAAAGCA GGCTCAGCAT TATTACCTCA CCCAGAACTT GTGCGAGCAA TTTTGGAAAC CGTGGTTGAT GCCGTTGATG TGCCTGTCAC TTTAAAAATT CGCACTGGCT GGGATCCCGA CAGTAGAAAC GGTCTGGAAA TCGCACGAAT AGCAGAACAA TCGGGCATCC AAGCACTTGC AGTGCACGGT CGTACTAGGC AATGTTTTTA TAATGGATTT GCTGAATACG ACACCATAAA AAAAATTAAA CAAAATGTGA CTATTCCTGT GATTGCAAAT GGTGATATCA CCTCAGTGGA AAAGGCAAAG TTTGTGCTTG ATTACACTGG CGCTGACGCC ATTATGATTG GACGAGGAGC ACAAGGTGCT CCTTGGATAT TCAATGAAAT TAATCACTAT CTAACAACCG GAGAGCAACT TTCCTCTCCG GCTAAAGCGG AAATTGCCCA TATCCTTCTT GGTCATGTAC AAGCTTTACA TGGTTTTTAC GGGGAAGTAA TGGGACCTAG AATTGCCAGA AAGCATGTTG GATGGTATTT AAAAGAGCAA GATCAGTTAG GTCACTTTAA GCGACAATTC AATGCAATTG ACTGCCCGTA TGAGCAATTA AAAACATTAG AAACTTACTT AAATAAATAA
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Protein sequence | MRIGQHQLDN KIILAPMAGV TDRPFRELCR KQGAGLAVSE MLSSNPRVWN SRKSKLRMDY HNESGIRSVQ IAGSEPLAMA TAAQLSVQQG AQIIDINMGC PAKKVNKKKA GSALLPHPEL VRAILETVVD AVDVPVTLKI RTGWDPDSRN GLEIARIAEQ SGIQALAVHG RTRQCFYNGF AEYDTIKKIK QNVTIPVIAN GDITSVEKAK FVLDYTGADA IMIGRGAQGA PWIFNEINHY LTTGEQLSSP AKAEIAHILL GHVQALHGFY GEVMGPRIAR KHVGWYLKEQ DQLGHFKRQF NAIDCPYEQL KTLETYLNK
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