Gene Ping_3215 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_3215 
Symbol 
ID4624648 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp3970912 
End bp3971871 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content43% 
IMG OID639798322 
ProducttRNA-dihydrouridine synthase 
Protein accessionYP_944501 
Protein GI119946821 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID[TIGR00737] putative TIM-barrel protein, nifR3 family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.618108 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATCG GGCAGCATCA ACTAGATAAC AAAATCATTT TAGCACCCAT GGCAGGGGTA 
ACTGATCGTC CCTTCCGTGA GCTTTGCCGA AAACAAGGTG CAGGACTTGC AGTGTCCGAG
ATGCTGTCAT CGAATCCGCG TGTATGGAAC AGCAGGAAGT CGAAGTTAAG AATGGACTAC
CATAATGAAT CTGGCATCAG ATCAGTGCAA ATTGCTGGCT CAGAGCCTTT GGCAATGGCG
ACAGCAGCAC AGTTGAGTGT GCAACAAGGC GCTCAGATTA TTGATATCAA TATGGGTTGT
CCCGCTAAAA AAGTGAATAA GAAAAAAGCA GGCTCAGCAT TATTACCTCA CCCAGAACTT
GTGCGAGCAA TTTTGGAAAC CGTGGTTGAT GCCGTTGATG TGCCTGTCAC TTTAAAAATT
CGCACTGGCT GGGATCCCGA CAGTAGAAAC GGTCTGGAAA TCGCACGAAT AGCAGAACAA
TCGGGCATCC AAGCACTTGC AGTGCACGGT CGTACTAGGC AATGTTTTTA TAATGGATTT
GCTGAATACG ACACCATAAA AAAAATTAAA CAAAATGTGA CTATTCCTGT GATTGCAAAT
GGTGATATCA CCTCAGTGGA AAAGGCAAAG TTTGTGCTTG ATTACACTGG CGCTGACGCC
ATTATGATTG GACGAGGAGC ACAAGGTGCT CCTTGGATAT TCAATGAAAT TAATCACTAT
CTAACAACCG GAGAGCAACT TTCCTCTCCG GCTAAAGCGG AAATTGCCCA TATCCTTCTT
GGTCATGTAC AAGCTTTACA TGGTTTTTAC GGGGAAGTAA TGGGACCTAG AATTGCCAGA
AAGCATGTTG GATGGTATTT AAAAGAGCAA GATCAGTTAG GTCACTTTAA GCGACAATTC
AATGCAATTG ACTGCCCGTA TGAGCAATTA AAAACATTAG AAACTTACTT AAATAAATAA
 
Protein sequence
MRIGQHQLDN KIILAPMAGV TDRPFRELCR KQGAGLAVSE MLSSNPRVWN SRKSKLRMDY 
HNESGIRSVQ IAGSEPLAMA TAAQLSVQQG AQIIDINMGC PAKKVNKKKA GSALLPHPEL
VRAILETVVD AVDVPVTLKI RTGWDPDSRN GLEIARIAEQ SGIQALAVHG RTRQCFYNGF
AEYDTIKKIK QNVTIPVIAN GDITSVEKAK FVLDYTGADA IMIGRGAQGA PWIFNEINHY
LTTGEQLSSP AKAEIAHILL GHVQALHGFY GEVMGPRIAR KHVGWYLKEQ DQLGHFKRQF
NAIDCPYEQL KTLETYLNK