| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_3039 |
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| Symbol | pilT |
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| ID | 4626052 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | - |
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| Start bp | 3738841 |
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| End bp | 3739875 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 639798157 |
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| Product | type II secretion system protein (twitching motility protein) (PilT) |
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| Protein accession | YP_944340 |
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| Protein GI | 119946660 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.37999 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATATAA CAGAATTATT GGCTTTCAGT GTAAAGCATA ATGCGTCAGA TCTACACCTT
TCTTCAGGAG TTCCTCCAAT GATTAGGGTC GATGGGGAGG TGCGTAAATT AAATGTCCCT
GCTTTAGATC CTAAAGAGGC ACAGACTCTT ATTTACGACA TTATGAATGA TAAACAGCGT
AAAGATTTTG AAGAGGATTT AGAAACCGAC TTTTCCTTTG AAATTCCAGG CTTAGCGCGT
TTCCGTGTTA ATGCTTTTAA CCAGAACCGT GGTGTATCGG CTGTCTTTCG TACTATCCCA
AGCAAAGTGT TAACATTAGA TGAACTGGGC GCACCTGAAA TATTTAAAAC AATATCAGAA
TACCCTCGCG GTTTAGTCTT AGTAACGGGG CCAACGGGCT CGGGTAAGTC AACCACCTTA
GCAGCAATGA TTGACTATAT TAATGAAAGT CGTCATGAGC ACATTTTAAC CATCGAAGAT
CCTGTCGAAT TTGTCCATGA AACAAAAAAA TCGCTGATCA ACCAGCGTGA AGTTTATAGA
CACACCTTAA GTTTTCAGCG CGCACTAAAA AGTGCATTGC GGGAAGATCC CGATATTATT
TTAGTCGGAG AACTGCGTGA TTTAGAAACC ATTCGTTTAG CAATCACAGC AGCGGAAACG
GGTCACTTGG TCTTTGCTAC CCTGCATACC ACTTCTGCGG CTAAAACGAT TAACCGTATT
ATTGATGTCT TTCCTGCGGG AGAGAAAAGC ATGGTGCGCT CAATGTTATC TGAATCATTA
CGTGCCGTTA TTTCGCAAGC TTTACTTAAA AAACCGGGTG GCGGGCGAGT TGCTGCGCAT
GAAATTATGT TGGGCATTCC CGCAATTCGG AATTTGATTC GTGAAGATAA AGTTGCGCAA
ATGTACTCAG TAATTCAAAC CGGAATGGTA CATGGCATGC AAACACTAGA TCAAAGTTTA
CGTGATTTAG TTGGCCAGGG TCTTATTGCA CACGCTGATG CTACGAAAAA AGCGGTCGAT
CCAAAAACAT TCTAA
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| Protein sequence | MDITELLAFS VKHNASDLHL SSGVPPMIRV DGEVRKLNVP ALDPKEAQTL IYDIMNDKQR
KDFEEDLETD FSFEIPGLAR FRVNAFNQNR GVSAVFRTIP SKVLTLDELG APEIFKTISE
YPRGLVLVTG PTGSGKSTTL AAMIDYINES RHEHILTIED PVEFVHETKK SLINQREVYR
HTLSFQRALK SALREDPDII LVGELRDLET IRLAITAAET GHLVFATLHT TSAAKTINRI
IDVFPAGEKS MVRSMLSESL RAVISQALLK KPGGGRVAAH EIMLGIPAIR NLIREDKVAQ
MYSVIQTGMV HGMQTLDQSL RDLVGQGLIA HADATKKAVD PKTF
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