| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2650 |
|---|
| Symbol | |
|---|
| ID | 4624378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 3250029 |
|---|
| End bp | 3253079 |
|---|
| Gene Length | 3051 bp |
|---|
| Protein Length | 1016 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639797778 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
|---|
| Protein accession | YP_943965 |
|---|
| Protein GI | 119946285 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0004] Ammonia permease
[COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR00836] ammonium transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0326651 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACTACT CATGGCTTCT TATTGCATCC ATTTTAGTGT TTTTTATGCA AGCGGGATTT
TTGTGTCTCG AAAGTGGTCA AATCCGCAGC AAAAATAGCA TCAACGTGGC GGCAAAAAAC
ATTTCTGATT TTATTATTGC AGTGCTTATT TATTGGGTAT TTGGCTTTGC TTTAATGTTT
GGTGATTCAC TGGGTGGGGT ACTGGGTACG GACCTTTTTT TTGTTGGTGA ACAGCAATCG
GCCTACCAAA TCAGCTTCTT TTTATTTCAA ATGATGTTTT GCGGCACCGC TGCAACGTTG
GTATCGGGTG CGGTTGCAGA GCGTATGTCC TTTATGGGCT ACCTGTCTAT TGCTGCCATA
CTGAGCGCAT TTATCTATCC GGTAGCGGGG CATTGGGCCT GGGCGTCTAA CTATCAAGCT
GCTAATCAAG GATGGTTAGA GCAATTAGGT TTTATCGATT TTGCGGGATC CACCGTTGTC
CATTCGGTTG GCGGTTGGGT TGCACTAGCG GCGATAATAG TGATTGGGCC CAGAATTGGA
CGTTTTGATT CCCAGCACGC CTTACCGAGT GGCAGTAATT TACCGATGTC GTTGCTTGGC
ACTCTTTTAA TCTGGTTAGG CTGGTTCGGA TTTAATGGTG GCAGCACCTT AGTGATGAAT
AATCAGGTGC CTCTGATCCT GCTTAATACC TGTTTAGCGG CTGTGGGAGG TGGTTTTGTC
GCATCGTTAT GTCACTATTG GCACAAACGC TATGTCGATG TCGGCACTAT TCTGAACGGT
ATTATCGCGG GGCTAGTTGC AATTACTGCG GGCTGTCACG CGGTGACACC TAAAGCGGCT
ATGTTGATTG GCATGATTGC AGGTATCATT TTATATTTTG GCAGGTTATG GATTGCTAAA
CTTAAAATAG ATGATGCCCT GGGGGTTGTT CCTGTCCATC TATTTGCCGG CATTTGGGGA
ACCTTAGCCG TCGCACTGTT TGCCGATTTA AGTGTGTTAG GGACGGATCT GACCCGAAGC
GAGCAGCTAT TTGTGCAACT TATCGGGGTT TTGGTTATTT CTGCATACAG TTTCGGGCTC
AGTTTTTTAC TATTATTGCT GGTTAACCGC TTTTTTCCAC TCAGAGTCAG TGCTGAGAAT
GAACTGCTGG GCATGAATAT CTCCGAACAT CGCGCGTCAA CAGAATTAAT CGACCTGCTT
GGTGCAATGA ATAAACAGGA GTCAGAGGGC AAATTTTCAC AACCGGTAAC CGTTGAACCT
TTTACTGAAG TGGGACAAAT TGCCAGTCAA TACAATAAAG TTATCAAGCG GGTAGATAGC
GAAATTTCAA ATCGTGATAG CGCGATTAAT AAATATAAGT CCAGTGAAAA GAGAAAAAGC
GCCATTCTAG ATTCGTCAAT GGACAGCATT GTCAGCATTG ATTTAGAGGG CGCGATTATC
GAATTTAATC CGGCCGCCGA ACGTACCTTT GGCTATTCAA AAAGTATGGT TATTAATAAG
AATTTTATCG ACTTGTTTAT ATTAGAATCC GATCAAGCCG CCGTGTGGAA AAACTTAGCC
TATAAATTTT TATCTGCGCA AGGTTTAGTG CGTGATCACC GCAATTCACT TACCTTGAAT
CGCCACTTAC AGTCTGAATT CCCTGCCGAA ATCACTATTA CCGGGGCAAG TTTTGGTAGT
GAGATACAAA ATGAATTTAC CCTGCATATA CGTGATGTAA CGCGGCAATT AAAACTGCAG
GGAAAACTAA AACTATTGGC CTATAGCGAC CCCTTAACCG GTTTATATAA CCGTACCTAC
CTGATGGATT CGTTAACAAC AGCGATTAAT CGCAGTGCCG ATAGCGATCG AGATGTGGTT
ATGTTTTTTC TGGATTTGGA TAGATTTAAA AAGATTAATG ACACATTAGG GCATAAGGCC
GGTGATGAGC TGCTCTGTGA AGTAGCAACA CGGCTAATTA GCGTTACCCG CAACACTGAT
ATTATCGCAA GATGGGGGGG CGACGAGTTT GTTATTTTGT TCACTGAAGC GGTTAACCAA
GCGTTTGTAG ACAGTAAAGC GACTGAAATA TTGAAGGTTA TGCGTCAGCC CTTAGCGTTA
GAAGGGCGGG TGATCAGCAT ACCGACCAGT ATTGGTATCG CCACCGTCCA ACCGGGTATT
ACCACCGCCG AACAATTAGT GCAGCAGGCT GATCTTGCCA TGTACTCAGC AAAACAGGGC
GGCCGGGATA ACTACCAAAT ATTTAAAGCG GAGATGGGCC ATCAGGCTGC CCGTGATTTT
GATCATGAGC AGGATATGCG CAAAGGTATT GCGGCGAAAG ATCAGTTCTT TATGGTCTAT
CAGCCTAAAG TGACGGCTGA TAATCAACTG GTCGGTCTGG AAGCTTTAAT GCGCTGGCAG
CATCCGCAAG AAGGGTTGAT ATCACCGGCT GATTTTATCC CACTGGCGGA AGAGTCTAAC
TTGATTATTG AGCTGAGTGA ATTTGCCATA TTAACGGTGC TTGAGCAGAT CCGCCGTTGG
CTGGATAGTG GATATGAAGA CGTTACCGTA GCGATAAATA TTACGGGCAA ACATCTTGTT
TCCGGTACGC TTGTTCCCTA CATCTCTGAA CTATTGACCC GTTTTGATAT AGAGGGTACT
GCGATTGAAA TTGAAATAAC AGAAGGGGTA CTGTTAACCG ATGTCGATCG CTGTATCGAG
GTAATGTCTG ATCTCAAATC ATTAGGCATT AAAATATCGA TAGATGATTT TGGAACGGGT
TACTCTTCTC TAAGCTATCT AAAACGTCTG CCTATTGATG TGCTTAAAAT TGATAAATCA
TTTGTTGATG ACTGTGCAAT CTCATTAGAA GACGGGGAAA TATGCGCAAC GATCATTAAT
CTGGCTATCA ATCTGGAGCT AACAACGGTT GCTGAGGGGG TCGAAACACA GGAGCAACTT
GATTTTCTGG TGGCGCATGG TTGTGATACC TACCAGGGTT ACTTCTTCCA TAAACCAAAT
TCCGCGCAGG TTATTGAAAA ACTACTGCAG CGAGTAAGCA CGCTGGTGTA A
|
|---|
| Protein sequence | MDYSWLLIAS ILVFFMQAGF LCLESGQIRS KNSINVAAKN ISDFIIAVLI YWVFGFALMF
GDSLGGVLGT DLFFVGEQQS AYQISFFLFQ MMFCGTAATL VSGAVAERMS FMGYLSIAAI
LSAFIYPVAG HWAWASNYQA ANQGWLEQLG FIDFAGSTVV HSVGGWVALA AIIVIGPRIG
RFDSQHALPS GSNLPMSLLG TLLIWLGWFG FNGGSTLVMN NQVPLILLNT CLAAVGGGFV
ASLCHYWHKR YVDVGTILNG IIAGLVAITA GCHAVTPKAA MLIGMIAGII LYFGRLWIAK
LKIDDALGVV PVHLFAGIWG TLAVALFADL SVLGTDLTRS EQLFVQLIGV LVISAYSFGL
SFLLLLLVNR FFPLRVSAEN ELLGMNISEH RASTELIDLL GAMNKQESEG KFSQPVTVEP
FTEVGQIASQ YNKVIKRVDS EISNRDSAIN KYKSSEKRKS AILDSSMDSI VSIDLEGAII
EFNPAAERTF GYSKSMVINK NFIDLFILES DQAAVWKNLA YKFLSAQGLV RDHRNSLTLN
RHLQSEFPAE ITITGASFGS EIQNEFTLHI RDVTRQLKLQ GKLKLLAYSD PLTGLYNRTY
LMDSLTTAIN RSADSDRDVV MFFLDLDRFK KINDTLGHKA GDELLCEVAT RLISVTRNTD
IIARWGGDEF VILFTEAVNQ AFVDSKATEI LKVMRQPLAL EGRVISIPTS IGIATVQPGI
TTAEQLVQQA DLAMYSAKQG GRDNYQIFKA EMGHQAARDF DHEQDMRKGI AAKDQFFMVY
QPKVTADNQL VGLEALMRWQ HPQEGLISPA DFIPLAEESN LIIELSEFAI LTVLEQIRRW
LDSGYEDVTV AINITGKHLV SGTLVPYISE LLTRFDIEGT AIEIEITEGV LLTDVDRCIE
VMSDLKSLGI KISIDDFGTG YSSLSYLKRL PIDVLKIDKS FVDDCAISLE DGEICATIIN
LAINLELTTV AEGVETQEQL DFLVAHGCDT YQGYFFHKPN SAQVIEKLLQ RVSTLV
|
|---|
| |