Gene Ping_2604 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_2604 
Symbol 
ID4624312 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp3196266 
End bp3198440 
Gene Length2175 bp 
Protein Length724 aa 
Translation table11 
GC content39% 
IMG OID639797734 
Product3-hydroxyacyl-CoA dehydrogenase, NAD-binding 
Protein accessionYP_943922 
Protein GI119946242 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.110209 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.266065 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTTTA CATTAGATAT TTCACAATCA GGCCCAACTT CGGGGGTTGC AACATTGACC 
TTTGATTTTC CGGGGGCACG AGTTAATAAA TTAGATTCAG TCGCATTATT AGAGCTCAAA
GGGCAGATTG ATTCTCTGGC AAAAAATAAT GTCGTTAAAC TGTTGGTCTT TCGCAGTGCC
AAAAAGGATA CCTTTATTGC CGGCGCTGAT ATCAATGAAA TTAAAGATCT GCTTAATGAG
GCACAAGCTT ATAAAGAAAT AAGAACCGGG CAGTTAATTA TTGATAATAT TTCTAAATTA
CCTTTTCCAA CCTTAGCGGT TATAAACGGG GTCTGTCTGG GTGGCGGTTG TGAGTTAGCG
TTAGCTTGTA CTTATCGCAT CGCCACGGAT AATCTTAACG CTATTATAGG CTTACCCGAG
GTCAGTTTGG GTATTATTCC CGGTTTTGGC GGTTGTGTGC GTTTACCAAA ACTGATTGGC
TTACAAGCTG CTCTGCAGTT AATACTGTCC GCTAAACCTG TCGCCCCTAA AAAAGCGCTG
CGACTCAAAT TAGTCGATCA TCTCTATAAT AATGAGCTTG AAGAAAGTTC AGTCGCTGAT
TTTATCGAAC GTTTAGTGAA TGATAAAAGC TTTGTGAAAG GGTTAATAAA GCGCCGTTCA
AAGTCTGCTA AGAAATTTAA CCAGAGAATT TTAGAAGATA ATATTTTAGG GCAAAAACTG
ATTTTTAAAA AAGCCAAAGA CAGTTTGCTT AAAAAAAACA AAGGTCAATA TCCCGCGCCG
CTTAAAGCTT TAGAAACCAT AGAAAAATCA TTCAATTTAA AAATAGCGGA AGCGTTAGAG
GTAGAAGCGA GAGCCATTTC TGAGCTTGCT GTTAGCGTAA TAAGTAAAAA TTTAATTCAA
CTTTTTTTTA CCTCTGAGGC ATTAAAAAAA GAAACCGGTA TTGTCGAATC CAATCTTGAG
CCACAAATAA TTAATCAGGC CGCGGTACTC GGCGCAGGGG TTATGGGCGG GGGGATCGCC
TGGTTATTTT CAAAAAATGA GATACCGGTC AGGCTTAAAG ATATTGAATG GGATGCGGTC
AGTAAAGGTT ATCAAACCGC GGCGCTCTAT TATGGACAAT TAAAAAAAGT CCATAAAATT
AACGAAAATA AGATCCGCGT TAAAATGAAT TATATTGCAG GGACGGTCAA TTATAACGGT
TTTAAAAGAA TTGATCTGGT TGTTGAAGCG GTGTCTGAAA ATCTAGAGGT TAAGAAAACA
GTCCTGGAAG AGGTTGAAGC ACAGCTGTCT AAGCAGGCGA TATTAGCGTC GAACACCTCG
AGTTTATCCA TTACTGAGAT GGCTGTAAAT CTGCAAAGGC CGGAAAATTT TATCGGTATG
CATTTTTTTA ATCCGGTTAA CAGAATGCCG CTTGTTGAAA TTATACCGGG GGAGAAAACC
AGCCAACAGA CCATTGTCAC ATTGGTTAAA CTCGCTAAAA AAGCCGGTAA AACACCCATT
GTTGTTGCTA ACTGTGCAGG TTTTTTAGTC AATAGAATTT TAATTTCATT TTTGAATGAA
GCCGCTCTGA TGCTTCAGGA GGGAGGCGTT GTTACCGAAA TGGACCATGC TCTTGAAGCA
TTCGGGTTGC CGATGGGACC TTTTGTTTTA GCCGATGAGG TCGGTATCGA TATTGGTTAT
CATGTTGCAA AAGTATTAGA GCAAGCCTAT GGCGAAAGAA TGAAAGTGGC GGGTTTATTT
ACCCAAATTT TTATCGATGA GAAGTTATTA GGTAAAAAAT CGGGTGTGGG TTTTTACCGC
CACAAAGGCC ACGACAAATC CTACAATGAG GCGCTGGATA AGATTATCTA TACTTATCGT
TTTAGCAATG GAATAACAGC CAAAGCATTT AACCAGGAGG AAATCGTAGA CAGGTGCATT
CTTATTATGG TCAATGAAGC GGTCAAATGT TTACAGGAAA ATATTGTTAA GAATCCGGCT
TATCTGGATA TGGCAATGAT CCTCGGTACA GGTTTTCCTG CATTTACAGG CGGTCTTTTA
AAATATGCCG ATAATCGTGG CATCGGCAAT ATTTGCGATA CATTAAATCA ATTAGCGGCT
TTATATGGTG AGCGTTTTCT GCCCGCTGAG CAATTAATAG ATAAAGCAAA AAACGGCGGG
AAATTTTATA ATTAG
 
Protein sequence
MNFTLDISQS GPTSGVATLT FDFPGARVNK LDSVALLELK GQIDSLAKNN VVKLLVFRSA 
KKDTFIAGAD INEIKDLLNE AQAYKEIRTG QLIIDNISKL PFPTLAVING VCLGGGCELA
LACTYRIATD NLNAIIGLPE VSLGIIPGFG GCVRLPKLIG LQAALQLILS AKPVAPKKAL
RLKLVDHLYN NELEESSVAD FIERLVNDKS FVKGLIKRRS KSAKKFNQRI LEDNILGQKL
IFKKAKDSLL KKNKGQYPAP LKALETIEKS FNLKIAEALE VEARAISELA VSVISKNLIQ
LFFTSEALKK ETGIVESNLE PQIINQAAVL GAGVMGGGIA WLFSKNEIPV RLKDIEWDAV
SKGYQTAALY YGQLKKVHKI NENKIRVKMN YIAGTVNYNG FKRIDLVVEA VSENLEVKKT
VLEEVEAQLS KQAILASNTS SLSITEMAVN LQRPENFIGM HFFNPVNRMP LVEIIPGEKT
SQQTIVTLVK LAKKAGKTPI VVANCAGFLV NRILISFLNE AALMLQEGGV VTEMDHALEA
FGLPMGPFVL ADEVGIDIGY HVAKVLEQAY GERMKVAGLF TQIFIDEKLL GKKSGVGFYR
HKGHDKSYNE ALDKIIYTYR FSNGITAKAF NQEEIVDRCI LIMVNEAVKC LQENIVKNPA
YLDMAMILGT GFPAFTGGLL KYADNRGIGN ICDTLNQLAA LYGERFLPAE QLIDKAKNGG
KFYN