Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_2254 |
Symbol | sdhA |
ID | 4623464 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | - |
Start bp | 2740382 |
End bp | 2742148 |
Gene Length | 1767 bp |
Protein Length | 588 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 639797394 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_943594 |
Protein GI | 119945914 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.453422 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.274072 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGAGTTTAC CGATTCGTGA ATTTGATGCT ATTGTGATTG GTGCGGGTGG CGCAGGTATG CGCGCAGCAC TTTCCATTTC AGAAGAAGGC AAAAGTTGTG CCTTAATAAG TAAAGTTTTT CCAACCCGCT CTCATACTGT TTCAGCGCAA GGCGGTATTA CTGTCGCATT GGGTAATGCC CATGAAGATG ATTGGCAGTA TCACATGTAT GATACCGTTA AGGGCTCTGA TTATATCGGT GACCAGGACG CTATTGAGTA TATGTGTAAA ATCGGGCCTG AAGTTGTACG CGAGCTTGAA CATATGGGCT TGCCTTTTTC TCGTTTTGAA GACGGCAGTA TTTACCAGCG TCCCTTTGGC GGGCAGTCTA AAGAATATGG TCAAGGTCAA GCATCTCGTA CTGCGGCAGC TGCCGACCGT ACTGGTCATG CTTTATTACA CACACTTTAT CAGCAGAATA TTAAAAATAA AACCACCGTT TTTTCTGAGT GGTATGCACT TGATTTAGTA AAAAATGATG ACGGTGATGT TGTTGGCTGT ACTGCTATTG ATATTGAGTC TGGCGAAGTA GTGATGTTTA AAGCACAGGC GACCGTGCTT GCAACGGGTG GAGCAGGTCG TATTTACGCC TCTACCACTA ATGCACATAT TAACACCGGC GATGGTGTTG GCATGGCGCT GCGTGCGGGT GTTCCAGTGC AGGATATGGA AATGTGGCAG TTCCATCCGA CTGGCATTGC TGGTGCAGGT ACACTAGTAA CAGAAGGCTG TCGTGGTGAA GGTGGTTATC TGCTTAATAA AGATGGCGAA CGTTTTATGG AACGTTATGC GCCAAATGCC AAAGATTTAG CAGGGCGCGA TGTTGTTGCC CGTGCAATGA TGATTGAAAT TCGTGAAGGT CGCGGTTGCG AGGGGCCGTG GGGCGTACAC CTTAAATTAA AACTAGACCA CTTAGGTAAA GATGTTTTAG AGTCGAGATT ACCAGGTGTT ATGGAATTAT CACGTACTTT TGCGCATGTT GATCCTGTTA AAGAGCCTAT TCCAGTTATT CCAACCTGTC ATTATCAAAT GGGTGGCGTA CCAACAACAG TCAATGGTCA AGTGCTTAAA TTGGATGAAA ACGGTAAAGA TGTAGAAGTT AAAGGACTCT TTGCAGTCGG TGAAATAGCA TGCGTATCAG TACACGGTTC TAACCGCTTA GGTGGTAATT CACTGTTAGA CTTAGTGGTA TTTGGCCGTG CGACAGGTAA ACATTTGGGT GTGGTGCTTG CGCAAGAAAA CACAGCTAAG GAGCCTACCC AGGAAAATAT TGATGCTACA CTGGAACGTT TTAACCGTTG GGAAAAAGGT AACGGCACTG AATGTCCAAA TCAAATCAGA AAAGATCTGC AGCAGTGTAT GCAAAACAAT TTCTCTGTCT TTAGAGATGG TGAGGCAATG GCCGAAGGCT TAGCTGAACT GAAAGTACTG CGTGAGCGTT TGAAAAATGC AAAATTAGAC GATAAAAGTA CCGAATTTAA CACTAACCGC ATTGAATGTT TAGAGCTTGA TAACTTGATG GAAACTGCAT TTTCAACTGC CATGGCCGCT AATTTTAGAA CGGAAAGTCG AGGCGCACAC AGCCGCTTTG ATTACCCGGA TCGGGATGAT AAAAGTTGGC TATGCCACAG CATCTTTAAT CCTGAAACCG AAGAGATGTG TAAGCGTGAT GTTAATATGA AACCAGTATT GCGTGAACCT TTCCCTCCTA AAGCACGTGT TTATTAA
|
Protein sequence | MSLPIREFDA IVIGAGGAGM RAALSISEEG KSCALISKVF PTRSHTVSAQ GGITVALGNA HEDDWQYHMY DTVKGSDYIG DQDAIEYMCK IGPEVVRELE HMGLPFSRFE DGSIYQRPFG GQSKEYGQGQ ASRTAAAADR TGHALLHTLY QQNIKNKTTV FSEWYALDLV KNDDGDVVGC TAIDIESGEV VMFKAQATVL ATGGAGRIYA STTNAHINTG DGVGMALRAG VPVQDMEMWQ FHPTGIAGAG TLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLAGRDVVA RAMMIEIREG RGCEGPWGVH LKLKLDHLGK DVLESRLPGV MELSRTFAHV DPVKEPIPVI PTCHYQMGGV PTTVNGQVLK LDENGKDVEV KGLFAVGEIA CVSVHGSNRL GGNSLLDLVV FGRATGKHLG VVLAQENTAK EPTQENIDAT LERFNRWEKG NGTECPNQIR KDLQQCMQNN FSVFRDGEAM AEGLAELKVL RERLKNAKLD DKSTEFNTNR IECLELDNLM ETAFSTAMAA NFRTESRGAH SRFDYPDRDD KSWLCHSIFN PETEEMCKRD VNMKPVLREP FPPKARVY
|
| |