| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_2212 |
|---|
| Symbol | |
|---|
| ID | 4623849 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 2694386 |
|---|
| End bp | 2696248 |
|---|
| Gene Length | 1863 bp |
|---|
| Protein Length | 620 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 639797350 |
|---|
| Product | protein-export membrane protein SecD |
|---|
| Protein accession | YP_943552 |
|---|
| Protein GI | 119945872 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0342] Preprotein translocase subunit SecD |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.363799 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0593357 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTAAATA AATACCCTAT GTGGAAGTAT TTGCTGCTTT TATTTATAGT TTTCATCAGT
TTACTTTATG CAGCTCCGAA TCTATACGGA GAAGATCCTG CCGTTCAAAT ATCTGCTACC
CGTGGTGCAA AAGTCGAGCT TTCGACGTTG GGCGACGTTC AAGATATTCT TAAACAGTCA
AATATCATTC CTAAAAGTGC CGTTCTTGAA AATGATCAGC TTTTAATTCG TCTAAAATCC
AGTGAAGATC AATTATTAGC GCGTGAAACC ATTATTGAAA AATTAGAGGG CGATTTTGTT
ACTGCGCTTA ATTTGGCGCC TTCAACACCT GCCTGGTTAG AAGCTATTGG TGCCGGGCCA
CTAAAATTAG GCCTTGATTT ACGCGGCGGT GTTTATTTTC TGATGGAAGT GGATATGGAT
GAGGCCGTCA GTAAAGCACA AGAGCAAATG GTGCAGGATT TACGTGGCGA TTTACGGACA
GAAAAAATAA GATTTCGTGG TATCACTAAA GCGAATAGCG CAACGGGTGT ACTTGTAACA
TTCACTGAGC AATCAATTTT GGACAGTGCC ATTGACTATT TAAAACCTAA TAATCCAGGT
TACCAATTTT CTGAATCCGT TGATAATGGC CGTTATATTC TATCTATTGA AATGACGGAG
CAGAAATTGC AGGCGAGCAA AGAGTACGCT CTGCAGCAAA ATTTGACTAT TCTTCGTAAC
CGAGTTAATG AACTTGGCGT TGCTGAACCT TTAGTTCAAC GGCAAGGTAC GGACAGAATT
GTTGTTCAAT TACCGGGTAT TCAAGATACG GCACGTGCAA AAGAGATCCT GGGTGCAACG
GCTACACTTG AGTTTCATGC AGTAGACTCA GAAACAAATA TTAATGATGC ATTAGCAGGA
CGTTTGCCTT CTTCATCAAT TGTTTATAAG GAGAGAGATG GTCGCCCTGT CGTGGTTAAA
AAACAGATTA TTTTAACTGG TAACCATATC GTGGATGCAC AATCGGGCAG TGATGATATG
GGGCGTCCTC AGGTTAGTAT CTCACTTGAT TCGCAAGGTG GCAGCATGAT GTCCCGTTTT
ACCAAAAATA ATATTGGTAA ACCAATGGCT ACCCTGTTTA TTGAGTATTT ACCGACAGGT
AAGAAAAAAC CGAACGGTAA GGCTATTATT GAAAAGCGTG AAGAAGTTGC CAATGTAGCC
ACTATTCAAG CGCAGCTTGG CCGTAGTTTT CGTATTACCG GACTTGATAA CGCGGCAGAA
GCACATAATC TGGCGCTATT ACTGCGCGCC GGTGCGCTTA TTGCACCTAT TCAAATCGTC
CAGGAACGTA CTATTGGACC GAGTTTAGGA CAAGAAAATA TAGATAACGG CATTAAGGCA
ATGGTCTATG GCATGCTTGC TGTTGTCTTG TTTATGTTTG TTTATTATCG AAAATTTGGG
GTTATCGCCA ATACGGCTTT GCTCTTCAAT ATCGTTATGA TTATCGGTTT TATGTCTATG
ATCCCAGGGG CTACATTAAC CTTACCTGGC ATTGCCGGTA TTGTCTTGAC TGTGGGTATG
GCCGTTGATG CGAATGTGCT TATATTTGAA AGAATTAGAG AAGAATTAGC TGCTGGAAAA
TCAATCCAAC AAGCAATTCA TGAAGGCTAT TCTAATGCAT TTTCTACTAT AGCGGATGCG
AATATTACTA CTTTCATAAC AGCATTAATT TTGTTTGCTG TGGGTACCGG ACCAATTAAA
GGTTTCGCTG TTACGCTCGC GATTGGTATT GCGACTTCTA TGTTTACTTC TATTTTTGGA
ACACGCGCTA TTGTAAACGC TGTCTGGGGT GGTCGTAATG ATATTAAGAA ACTATCAATC
TAG
|
|---|
| Protein sequence | MLNKYPMWKY LLLLFIVFIS LLYAAPNLYG EDPAVQISAT RGAKVELSTL GDVQDILKQS
NIIPKSAVLE NDQLLIRLKS SEDQLLARET IIEKLEGDFV TALNLAPSTP AWLEAIGAGP
LKLGLDLRGG VYFLMEVDMD EAVSKAQEQM VQDLRGDLRT EKIRFRGITK ANSATGVLVT
FTEQSILDSA IDYLKPNNPG YQFSESVDNG RYILSIEMTE QKLQASKEYA LQQNLTILRN
RVNELGVAEP LVQRQGTDRI VVQLPGIQDT ARAKEILGAT ATLEFHAVDS ETNINDALAG
RLPSSSIVYK ERDGRPVVVK KQIILTGNHI VDAQSGSDDM GRPQVSISLD SQGGSMMSRF
TKNNIGKPMA TLFIEYLPTG KKKPNGKAII EKREEVANVA TIQAQLGRSF RITGLDNAAE
AHNLALLLRA GALIAPIQIV QERTIGPSLG QENIDNGIKA MVYGMLAVVL FMFVYYRKFG
VIANTALLFN IVMIIGFMSM IPGATLTLPG IAGIVLTVGM AVDANVLIFE RIREELAAGK
SIQQAIHEGY SNAFSTIADA NITTFITALI LFAVGTGPIK GFAVTLAIGI ATSMFTSIFG
TRAIVNAVWG GRNDIKKLSI
|
|---|
| |