| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_1199 |
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| Symbol | |
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| ID | 4623601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | + |
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| Start bp | 1492221 |
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| End bp | 1495265 |
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| Gene Length | 3045 bp |
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| Protein Length | 1014 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 639796415 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_942631 |
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| Protein GI | 119944951 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.553063 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATATGA ACTCTTTTGG GCTTCTCACG TTGACTCAGA ATGCCGCCTT ATTATTGGCT
ATGTTTTTCA TCTATGATAT GGCAGCTTTT CGGAACCGTA CCGTATTCGG CTTTTACTGG
GCTATTTTTA CCGGTATTGC GTTGGGATTG ATAGGTATTA TCATCATGCT AACACCCTGG
GAGTATGCGC CGGGTATTAT AGTTGATAGT CGCGCGGTGT TGCTTGGGAT CTCCGGATTA
TTTTTTGGCA CTATACCTAC GTTAATTGCT ATGGTGATAA CCGCTACATT GCGCCTGTTT
CAGGGGGGCG GAGCTGCTGT GATCGGCGTT TTAGTGATTA TAACGTCGGG CACTCTTGGC
ATCGCCTGGC GCTATTATCG TCCGCATCCT TTGTCAGAGT TATCGTTCCG CGAAATTTAC
CTGTTTGGGG TCATTATCCA TGGGGTGATG TTAGCCCTAA CCTTTATTTT TCCTTGGGAA
ATGACACTGG CGGTACTCTC CAATATTAGC CTGCCGGTAC TGCTACTTTA CCCTTTAATA
ACAGCTTTAC TGGGGATGTT GTTTGTCCAG CGACTGCGAC GTAACCAAAG TACAGATGCG
CTAAAGGAAA GTGAATTTCT GTTTCGCTCC CAATTTGATT TAGGCAGTAT TGGTATTGCC
ATTACCTATC CAGGCAAAGG CTGGTTAAGG GTAAACCCAA GGCTTTGTGA AATACTTGGT
TACCGCGAAG AAGAACTGCT TCTGCTGAAC TGGTCTGAGC TGACTCACCC TGATGATCGG
CATCTTGATT TATACCAATA TGACCAGATG CTGACGGGAG AAGAAGATGG TTATTCACTG
GACAAACGTT TTATCCGTAA GGATGGGGAG AGCGTTTATG TCCATATGAC TATTTCCTGC
TATCGGGTTG ATGGAGCCGT CCAATTTGTG ATTGCCGGCA TCTTAGATTC CTCTGAGAGG
AAGCATGCCG AAGATAAAAT ACGGGGGAGA AAAGAGCAGC TTCTTTCCGT TTTGTCAGGC
AGTGAGCTCG GGTTCTGGGA CTGGAATATA GAAGCCAATA CAGTGCATCG AAATGCTCGC
TGGGCAGAAA TGCTAGGGTA CCGCTTTGAA GATATTCAGA ACGACACAAG CATCAACCTT
GATAGTGTTC ATCCCAATGA TTGTGGGAGA GTCTGGCAAT CAGTGACTGA CCACTTGGAA
GGGCGAACTG CGCAACACAA AATTGAATAC CGTATGCGTA CCAGACAGGG AGAGTACAAG
TGGATCCTGG ATTGCGCCAA AATAGTTAAC TACGGCGAGG ATCAGCAGCC ATTACGTATG
AGTGGGACGC ATACCGATAT CACCAAACGT AAACTCGCTG AGGAGTCGAT GCAATTGGCC
TCAATGGTTT ATCAAAACAG CCGTGAGGCA ATGACCGTTA CCGACAGCAA TGGCAATATC
ATTACCACCA ACCCGGCGTT TACGGAAATG ACGGGCTATA GTGCTGATGA GATAACCGGT
AAGAGCCATA CCTTCATTGT TTCCAAGCAG CAGGATAAGC GGGTTTATCA ACGCATGGAG
CTCGCCCTAA ACAGTACCGG TCACTGGCGG GGGGAGGTCA GTTGCCGCCA TAAAAATGGT
GAAAACTATA TGGCCTTGTT GGGGATCAAT TCCATTTATA ATGAGGATAG ATCAGTTCAC
CGCCGGGTTG CGCAGTTCTC TGATATTACC GAGAGGAAAA AATCTGAAAA AATCATCTGG
AAACAAGCGA ACTTCGATAA TTTAACTGGG CTTTCCAATC GCCAGATGTT CCATGACCAG
TTGCTTCATG AAAAGAATAA AGCACAGCGT AGAGGCCTCA ACGTTGGCTT ATTGTTTCTC
GATCTTGATC GCTTTAAGGC AGTCAACGAT ACCCTAGGTC ATAATATGGG CGATCAGCTT
CTGATCGATG TTGCACAACG CCTGCGTAAC TGTGTACGGA AAAGAGATCT AGTATCACGC
TTTGGAGGGG ACGAATTTAC CGTAATTATT GGTGGGTTGA AAAACACACA AAGTGTTGAG
CGTGTCGCAC AAAAAATCCT GTGCGAATTA GCCGAGCCAT TCTTGCTGGG TGAGCAAAAT
GTTTATATTA CACCAAGCAT CGGCATAACT TTCTATCCGA AAGATGGGGA GGCAACCGAA
ATGCTGTTAA AAAATGCCGA TCAAGCTATG TATTCGGCCA AGGAAAAAGG GCGAAACTGT
TACCACTATT TTACCAACTC TATGCAGGAA CAGGTAGAAC GTGGGGGGCA ACTGGCAAAC
GATCTACGCT ATGCACTGAA AAAGAACCAG CTGGAGCTTT ACTATCAGCC GATCGTGGCG
TTAGGGACAG GTCAGATCCG TAAAGCTGAG GCTTTGATCC GCTGGCATCA CCCTGAACTC
GGTATGGTGA GCCCTGCAGA ATTTATCCCC ATTGCCGAAG AAACCGGCAC GATTGTTGAA
ATAGGTGACT GGGTATTCCG CCAGGCAGCC GATCAGGTTG CCCACTGGCG TCGTGAGTAT
CAGAATGACT TTCAGGTAAG TATCAACAAA TCCCCGGTAC AGTTCCGTGA GGGGGGGAGT
GACATTACCA GCTGGTTGGA ACATCTGTTG GCACTCGGTC TGCCCGGGCA GGCGGTGGTT
ATTGAGATCA CCGAAGGTCT TCTACTTGAT GGCAGTAGTA GGATAGTGAT CGACAAGCTG
CTGGCGTTCC GTGATTCCGG TATTGAGGTG TCACTTGATG ATTTTGGTAC TGGCTATTCA
TCGATGTCCT ATCTCAGAAA ATTTCATATC GACAACCTCA AAATAGATCA ATCCTTCGTG
CGCAATCTTA AAGTGGATTC CGATGACATG ATACTCTGTG AAGCTATCAT TATTATGGCA
CACAAGCTGG GTATGCAAGT GATCGCTGAA GGGATCGAAA ATGAGGAGCA GCGGCGTTTA
CTAAGTGCCG CCGGGTGTGA TTACGGACAG GGTTATTTGT TTGCTAAACC GCTACCAGAA
AAGGACTTCA GCTGCTTGTT GCTGCGTCAT ATTCATGTGG CGTGA
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| Protein sequence | MYMNSFGLLT LTQNAALLLA MFFIYDMAAF RNRTVFGFYW AIFTGIALGL IGIIIMLTPW
EYAPGIIVDS RAVLLGISGL FFGTIPTLIA MVITATLRLF QGGGAAVIGV LVIITSGTLG
IAWRYYRPHP LSELSFREIY LFGVIIHGVM LALTFIFPWE MTLAVLSNIS LPVLLLYPLI
TALLGMLFVQ RLRRNQSTDA LKESEFLFRS QFDLGSIGIA ITYPGKGWLR VNPRLCEILG
YREEELLLLN WSELTHPDDR HLDLYQYDQM LTGEEDGYSL DKRFIRKDGE SVYVHMTISC
YRVDGAVQFV IAGILDSSER KHAEDKIRGR KEQLLSVLSG SELGFWDWNI EANTVHRNAR
WAEMLGYRFE DIQNDTSINL DSVHPNDCGR VWQSVTDHLE GRTAQHKIEY RMRTRQGEYK
WILDCAKIVN YGEDQQPLRM SGTHTDITKR KLAEESMQLA SMVYQNSREA MTVTDSNGNI
ITTNPAFTEM TGYSADEITG KSHTFIVSKQ QDKRVYQRME LALNSTGHWR GEVSCRHKNG
ENYMALLGIN SIYNEDRSVH RRVAQFSDIT ERKKSEKIIW KQANFDNLTG LSNRQMFHDQ
LLHEKNKAQR RGLNVGLLFL DLDRFKAVND TLGHNMGDQL LIDVAQRLRN CVRKRDLVSR
FGGDEFTVII GGLKNTQSVE RVAQKILCEL AEPFLLGEQN VYITPSIGIT FYPKDGEATE
MLLKNADQAM YSAKEKGRNC YHYFTNSMQE QVERGGQLAN DLRYALKKNQ LELYYQPIVA
LGTGQIRKAE ALIRWHHPEL GMVSPAEFIP IAEETGTIVE IGDWVFRQAA DQVAHWRREY
QNDFQVSINK SPVQFREGGS DITSWLEHLL ALGLPGQAVV IEITEGLLLD GSSRIVIDKL
LAFRDSGIEV SLDDFGTGYS SMSYLRKFHI DNLKIDQSFV RNLKVDSDDM ILCEAIIIMA
HKLGMQVIAE GIENEEQRRL LSAAGCDYGQ GYLFAKPLPE KDFSCLLLRH IHVA
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