Gene Ping_1157 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_1157 
Symbol 
ID4624546 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp1448076 
End bp1448915 
Gene Length840 bp 
Protein Length279 aa 
Translation table11 
GC content38% 
IMG OID639796372 
ProductDNA ligase 
Protein accessionYP_942593 
Protein GI119944913 
COG category[L] Replication, recombination and repair 
COG ID[COG1793] ATP-dependent DNA ligase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00148017 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.132142 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCATATA AGATATTATT TTTTCTACTT TGTCTTTTTT CACCTTTATC TCACTCAAAC 
GAAACTTTAT CACCTCCGAT TCAACTTGCT ACCCTTTATC ATCAAGATAT TAATATCCAG
GCATATTGGG TAAGCGAGAA ATTGGATGGC GTGCGTGCTT ATTGGGACGG CAAACAACTC
ATTTCCAAGC AGGGTAATGT TTTTAATGCG CCGGGGTGGT TTATTAAAGA TTTCCCACAA
CAGCGATTAG ATGGTGAGTT GTGGATTAAT CGTCATCAAT TTGAACAAGT TTCAGGGATC
ACGCGAAAAC TGCAGCCCAT TGATCAAGAG TGGCAAAAAA TATCTTTTAT GATTTTTGAC
CTGCCTGGCT CTGATGCTGA TTTCACATCC CGTTTACAAC AAATACAAAA ATTAATTCAG
TCAAGTGACT CAGCCTATCT CAAAATGATT AAACAACAAC GAGTTGAAAA TAATCAGCAG
CTGCAATTAT TATTAGAGCA GGTACTCAAT AATGGGGGTG AAGGGTTAAT GCTACATAAA
GGGGAAGCTT ACTATCAGGC AAAACGCAGT AAAGATTTAA TGAAATTAAA AAAATATGAA
GATGCTGAGG CGGTTGTTAT TCAGTATTTT CCCGGTAAAG GGAGAAACGC TGGTAGGCTT
GGATCATTAC TTGTTGAAAC AAAAGAGGGA ATTAAATTCA AAATTGGTAC TGGATTCTCC
GATCTAGAGC GTGAAAACCC ACCGCCTATT GGCGCTACAA TCACTTATAA ATACACTGGA
AAAACAAATA ATAATGTTCC CCGTTTTGCC AGCTTTATGC GTATTAGAGA CGCTTATTAA
 
Protein sequence
MSYKILFFLL CLFSPLSHSN ETLSPPIQLA TLYHQDINIQ AYWVSEKLDG VRAYWDGKQL 
ISKQGNVFNA PGWFIKDFPQ QRLDGELWIN RHQFEQVSGI TRKLQPIDQE WQKISFMIFD
LPGSDADFTS RLQQIQKLIQ SSDSAYLKMI KQQRVENNQQ LQLLLEQVLN NGGEGLMLHK
GEAYYQAKRS KDLMKLKKYE DAEAVVIQYF PGKGRNAGRL GSLLVETKEG IKFKIGTGFS
DLERENPPPI GATITYKYTG KTNNNVPRFA SFMRIRDAY