Gene Ping_1082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_1082 
Symbol 
ID4625376 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp1353219 
End bp1355231 
Gene Length2013 bp 
Protein Length670 aa 
Translation table11 
GC content42% 
IMG OID639796298 
Productexcinuclease ABC subunit B 
Protein accessionYP_942520 
Protein GI119944840 
COG category[L] Replication, recombination and repair 
COG ID[COG0556] Helicase subunit of the DNA excision repair complex 
TIGRFAM ID[TIGR00631] excinuclease ABC, B subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00208033 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATAAAC GCTTTCAACT TGTTTCTCAA TTCTCACCTG CCGGTGACCA ACCCCAAGCC 
ATTGAACAAT TAATTAATGG TCTTAAGTCT GGTCTCGCTT TTCAGACATT GCTGGGTGTG
ACGGGATCGG GTAAAACATT TACCTTAGCG AATGCGATTG CAAAGCTTAA CCGTCCGACC
TTAATTCTTG CGCCCAATAA AACACTTGCT GCACAGTTAT ACGGTGAAAT GAAAGAATTT
TTTCCCAATA ACGCCGTCGA ATATTTTGTT TCCTATTATG ATTATTATCA GCCTGAAGCC
TATGTACCCA GTTCAGATTC TTTTATCGAA AAAGATGCGG CTATTAACGC GCATATTGAA
CAGATGCGCC TTTCTGCGAC CAAAGCGCTC TTAGAACGTA AAGATGTCGT CTTAGTGGCT
TCCGTCTCAG CAATCTATGG TTTGGGTGAT CCAACCGCTT ATTTGCAAAT GATGCTGCAC
CTCACTGTCG GGGAGATAAT ATCAAGCCGT GAGATACTGC AGCGTTTAGT CGATTTACAA
TATAACCGTA ATGAAACCGA GCTAAGTCGC GGTACCTTTC GCGTACGTGG TGAAGTGATT
GATATCTTTC CTGCAGATTC GGAAAAAGAA GCCTTACGAA TTGAGTTGTT TGATGATGAG
GTCGAGCAAA TTTCAGTGTT TGATCCGCTT ACCGGCCAAG GAATAGATAA GCTTGCGCGT
GTGACCGTTT ACCCTAAGAC CCATTATGTT ACTCCGCGAG AGCAAATCCT TAAAGCCGTC
GACGCGATTA AAGTAGAGCT TAATGAGCGT AAAAAAGAGT TTCTTGAGCA GAATAAACTG
CTTGAAGAGC AGCGCATCTC GCAGCGTACT CTGTACGATA TTGAGATGAT GAATGAACTT
GGGTATTGCT CTGGTATAGA AAACTACTCA AGGTACCTCT CGGGGCGCAG CGAGGGCCAA
GCACCTCCTA CTTTGTTTGA TTATCTGCCT AAAGATGCTT TATTAATTAT CGATGAAAGC
CATGTCACCG TGCCGCAAAT TGGTGCCATG TATAAAGGAG ACCGTTCTCG TAAAGAAAAC
CTGGTTAATT ATGGCTTTAG GTTACCTTCT GCCCTGGACA ACCGGCCCTT GAAATTTGCA
GAGTTTGAAA AAATAGCACC ACAAACTATT TATGTTTCAG CCACCCCCAG CGATTATGAA
ATTAATAAAT CTCAAGGTGA GATCATACGT CAGGTTATAC GTCCTACCGG TTTACTGGAT
CCTGTTATAG AAGTTCGCCC GGTGACAACG CAGGTTGATG ATCTGCTCTC AGAGATTAAT
ATCCGTTTAC CCTTAAAAGA ACGTGTCTTA GTGACGACGT TAACCAAGCG AATGGCGGAG
GATTTGACTG ATTATTTGCA CGAGCACGGT ATTAAAGCCC GTTATCTTCA CTCCGATGTT
AATACGGTTG AACGTGTTGA GATAATCAGA GATTTACGCT TAGGTATTTT TGACGTGTTA
ATTGGCATTA ACTTGTTACG CGAAGGCCTG GATATTCCAG AAGTTTCTTT GGTGGCTATT
TTAGATGCCG ATAAAGAGGG CTTTCTGCGA TCCGAACGTT CACTTATTCA AACCATGGGA
CGTGCCGCCC GTAATTTAAA TGGTAAAGCC ATTTTATATG CCGCTCGTAT TACAGGCTCT
ATGCAAAAAG CGATCAAAGT AACCGAAGAT CGGCGTGAAT TACAAAATAA ATTTAATATT
GAAAATGGCA TTATTCCGCA AGGTTTGTCG AAACAAGTTA ACGATGTAAT GCAGTTGGGG
CAAAAAAACC TTAAAAAAGG TAATTTAAAA CAGGGTAAGG TTGCTGAATA TAAAGCAAAT
TACCAGATAC ATAGCGAACA AGATATTCTT AAACAGATAG CATTATCAGA AAAACAGATG
TTTGCCTGTG CTAAAAATTT AGAGTTTGAA AAAGCGGCTT TATTTCGAGA TGAGGTGACT
AAGTTACACG AGCAGTTAGT AAGTATAGGA TAA
 
Protein sequence
MDKRFQLVSQ FSPAGDQPQA IEQLINGLKS GLAFQTLLGV TGSGKTFTLA NAIAKLNRPT 
LILAPNKTLA AQLYGEMKEF FPNNAVEYFV SYYDYYQPEA YVPSSDSFIE KDAAINAHIE
QMRLSATKAL LERKDVVLVA SVSAIYGLGD PTAYLQMMLH LTVGEIISSR EILQRLVDLQ
YNRNETELSR GTFRVRGEVI DIFPADSEKE ALRIELFDDE VEQISVFDPL TGQGIDKLAR
VTVYPKTHYV TPREQILKAV DAIKVELNER KKEFLEQNKL LEEQRISQRT LYDIEMMNEL
GYCSGIENYS RYLSGRSEGQ APPTLFDYLP KDALLIIDES HVTVPQIGAM YKGDRSRKEN
LVNYGFRLPS ALDNRPLKFA EFEKIAPQTI YVSATPSDYE INKSQGEIIR QVIRPTGLLD
PVIEVRPVTT QVDDLLSEIN IRLPLKERVL VTTLTKRMAE DLTDYLHEHG IKARYLHSDV
NTVERVEIIR DLRLGIFDVL IGINLLREGL DIPEVSLVAI LDADKEGFLR SERSLIQTMG
RAARNLNGKA ILYAARITGS MQKAIKVTED RRELQNKFNI ENGIIPQGLS KQVNDVMQLG
QKNLKKGNLK QGKVAEYKAN YQIHSEQDIL KQIALSEKQM FACAKNLEFE KAALFRDEVT
KLHEQLVSIG