Gene Ping_1080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_1080 
Symbol 
ID4625374 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp1351088 
End bp1351630 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content38% 
IMG OID639796296 
Productpeptidyl-prolyl cis-trans isomerase, cyclophilin type 
Protein accessionYP_942518 
Protein GI119944838 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0652] Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000078016 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACACT TAATATCTAT TTTTCTGCTC TTTCTTAGCT TCTCTGTATT TTCAGACGAA 
AATCCAACTG TTTTAATGGA AACATCCCAA GGCCCCATTA TTATTGAATT GTATCCAACA
CTAGCCCCCA AAACAGTGGA CAATTTTTTA AAATATGTAC AAACAGATGG TTTTAAGCAA
ACTACCTTCC ACCGTATTAT TAATAATTTT ATGATCCAGG GAGGAGGTTT TGAGGTGTCT
GGAAAAAAAG CGGTCACTTT TGCAGCAATA GAGAATGAAT CCCGCAATGG TTTAAGCAAC
AAACGCGGCA CCATTGCCAT GGCAAGAACC AACAATCCGC ATTCTGCCAC TCGCCAATTT
TTTATTAATC ACAATGATAA TCATTTTTTA GATGCACAAG ATGAACGCTG GGGTTACAGT
GTATTCGGCA AAGTGATTAA AGGGATGGAG GTTGTCGATA AAATAGCAAT GGTCAAGACA
GGCGCTGGCG ATAAACCCAT TCAGACTGTT ATTATTAATC GCATCTCAGC AGGTAAAAAA
TAA
 
Protein sequence
MKHLISIFLL FLSFSVFSDE NPTVLMETSQ GPIIIELYPT LAPKTVDNFL KYVQTDGFKQ 
TTFHRIINNF MIQGGGFEVS GKKAVTFAAI ENESRNGLSN KRGTIAMART NNPHSATRQF
FINHNDNHFL DAQDERWGYS VFGKVIKGME VVDKIAMVKT GAGDKPIQTV IINRISAGKK