Gene Ping_0628 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_0628 
Symbol 
ID4624734 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand- 
Start bp809053 
End bp810150 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content38% 
IMG OID639795828 
ProducttRNA (uracil-5-)-methyltransferase 
Protein accessionYP_942080 
Protein GI119944400 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 
TIGRFAM ID[TIGR02143] tRNA (uracil-5-)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.37473 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTCTGC AATTTGTTGA TCCTGAAAAT TATGAAACAC TGTTAGCCGC TAAAAAAGAG 
CATCTTAATA AACAATTTGC CATCTTTAAC CCGCCGGCTT TGGAATGTTT TGCATCACCC 
AAATTACATT ATCGGATGCG TGCTGAGCTT CGCGTATGGC ATGATGGTGA TGAACTTTAT 
TACATTATGT TTGATAAAAA GACCAAACAA AAATTCCGCG TGGAGCAATT CCCCCCGGCA 
AGTGAATTAA TTAATAACTT AATGCCTGTC TTGCTTGAAT TAGTAAAATC GTCCGAGATA 
CTGCGTTATA AACTGTTTCA GATTGATTTT TTATCTAACT TAAAAGGTCA GGTAATTGTA 
AGCCTGCTTT ATCACAAACA ACTTGACGAT AACTGGCTGG TGGAAGCAAA GCGTATTAAA 
GCTGAATTAT TAAAGCAGTT TGATATCAAC TTTATTGGTC GTGCCAGAAA ACAAAAGATA 
TTGCTCGATT ACGATTATGT GATCGAAGAA TTACAGGTTG ATGGCAATAA ACTGTTTTAT 
CAACAAATTG AAAATAGCTT TACCCAACCA AATGCAAAGG TCTGCGAAAA AATGTTGGAG 
TGGGCAATTG ACTGTACCCG CGATAGCCAA GGTGACTTAC TGGAGCTTTA TTGCGGTAAT 
GGTAACTTCT CATTGGCACT GGCGAAAAAC TTTAATAAAG TCTTAGCCAC TGAGATAGCA 
AAACCATCGG TTGAGTCAGC GCAGTTTAAT ATGGCCCAAA ATGGTATTAA TAACGTCACT 
GTTATTCGTA TGTCTGCTGA AGAATTTACT CAGGCAATCA ATGGCGAACG TGAATTTTAT 
CGCTTAAAAG AGATCACTTT AAGTGATTAC CAATGTAATA CTATTTTGGT TGATCCGCCC 
AGATCGGGCC TTGATGATGA AACGGTCAAG ATGGTGCAAC ACTACGACAA TATTTTATAT 
ATCAGCTGCA ATGCGGATAC CTTATCGCGT AACCTGGAAG TCCTTAGCAA AACACATGAA 
ATAAAACGTT TTGCTTTATT TGACCAATTC CCTTATACCT ACCACAGCGA AGCGGGTGTT 
TATTTGGTTA AACGATAA
 
Protein sequence
MTLQFVDPEN YETLLAAKKE HLNKQFAIFN PPALECFASP KLHYRMRAEL RVWHDGDELY 
YIMFDKKTKQ KFRVEQFPPA SELINNLMPV LLELVKSSEI LRYKLFQIDF LSNLKGQVIV 
SLLYHKQLDD NWLVEAKRIK AELLKQFDIN FIGRARKQKI LLDYDYVIEE LQVDGNKLFY 
QQIENSFTQP NAKVCEKMLE WAIDCTRDSQ GDLLELYCGN GNFSLALAKN FNKVLATEIA 
KPSVESAQFN MAQNGINNVT VIRMSAEEFT QAINGEREFY RLKEITLSDY QCNTILVDPP 
RSGLDDETVK MVQHYDNILY ISCNADTLSR NLEVLSKTHE IKRFALFDQF PYTYHSEAGV 
YLVKR