Gene Ping_0562 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_0562 
Symbol 
ID4623939 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp729220 
End bp730776 
Gene Length1557 bp 
Protein Length518 aa 
Translation table11 
GC content42% 
IMG OID639795758 
Productoligopeptide ABC transporter extracellular solute-binding family 5 protein 
Protein accessionYP_942015 
Protein GI119944335 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTTT TCAAAACCAA ACTAACGGTT GCTTTGCTGG CAGCAGGATT AAGCTTTAGT 
GTTGCAGCAG CAGATATTAC TGTTGCTTAT GATGCTGATC CGGTATCACT TGACCCGCAT
GAGCAACTTT CAGGTGGAAC GCTGCAGATG TCCCATATGC TTTTTGATCC GCTTATTCGT
TTCACTCAAG AAATGGACTT TGAACCCCGT TTAGCTTCAA AATGGGAACG TATTGATGCG
ACCACATTCC GCTTTAATCT GCGTAAAGGG GTTAAATTCC ACTCCGGCAA TACGATGACT
GCGGACGATG TTATTTGGAC ATTTAATCGT CTGAAAAACT CTGCTGACTT TAAAGGCGTT
TTTTCACCTT ATGAGAAAAT GATTAAAATC GATGATTACA CGGTAGAGAT CAAGTCAACT
GAACCTTACC CGTTAGTACT GCAAACGGCG ACCTATATCT TCCCGATGGA CAGAAAATTC
TATACTGGCG AAATGGACGG TAAAGATAAA AGTGAAATTT TAAAACATGG TGGTTCTTTT
GCGTCAACGC ACGTTTCAGG CACAGGTCCC TATACAATAA CAACACGTGA ACAGGGCATT
AAAGTGGTAT TTGATCGTTT TGATGATTAT TGGGATACAA ACTCTCCCGG TAACGTTGAT
AAACTGACAC TGGTACCGAT TAAAGAAGAT GCAACACGTG TTGCAGCCCT TCTTTCTGGT
GATGTCGATA TGATCTATCC GGTGGCACCA AACGATCAGA AACGTGTTGC TGATACTGAA
GGTCTTAAAC TAACGACTGT TCCCGGCTCT CGCATTATCA CTTTCCAAAT GAATCAGAAA
AGTAATCCGG CGCTTAAAGA TGTACGCGTT CGCCAGGCGA TTGTCCATGC CATTAATAAT
GACGGTATTG TTAAAAAGAT CATGAAAGAT TTTGCAACGA CTGCTGGCCA ACAAGGACCT
GCTGGTTACG CGGGTTATGA TGAAGCCTTA GTGCCTCGTT TTGATGTGGC AAAAGCGAAG
AAATTAATGG AAGAAGCGGG TTACTCTAAA GATAAACCCT TGCAGATTTC TATGATGGCA
CCCAACAACC GTTATGTGAA GGATGCTCAA ATCGCACAGG CAACTGCCGG TATGCTAGCT
AAAATTTACA TTAATGTAGA CTTGAAAACA CTGCCTAAAG CGCAATACTG GCCTGAATTT
GATGTTTGTG CTTCGGACAT GATGATGATC GGTTGGCATT CAGATACAGA AGATTCAGCT
AACTTTTCTG AATTCCTGAT GATGACGCGT GATGCTGATG CGGGTAAAGG TGCTTATAAC
TGCGGGAATT ACTCTAATCC AGAAGTTGAT CGTTTAGTTA ATGCTGCCAA TGCTGAAACA
GATCCTGCTA AACGTGCGAC TATGTTACAA AAGGTTGAGC AAATATTGTA CAAAGATGCG
GCATTTGTAC CTCTTCATTG GCAGAACTTG GCATGGGGAT CAAAATCTAA CCTTCAGATT
GAACCCATAG TTAACTCCAT GAACTTCCCA TACTTCGGTG ACCTTATTGT TAAATAG
 
Protein sequence
MKFFKTKLTV ALLAAGLSFS VAAADITVAY DADPVSLDPH EQLSGGTLQM SHMLFDPLIR 
FTQEMDFEPR LASKWERIDA TTFRFNLRKG VKFHSGNTMT ADDVIWTFNR LKNSADFKGV
FSPYEKMIKI DDYTVEIKST EPYPLVLQTA TYIFPMDRKF YTGEMDGKDK SEILKHGGSF
ASTHVSGTGP YTITTREQGI KVVFDRFDDY WDTNSPGNVD KLTLVPIKED ATRVAALLSG
DVDMIYPVAP NDQKRVADTE GLKLTTVPGS RIITFQMNQK SNPALKDVRV RQAIVHAINN
DGIVKKIMKD FATTAGQQGP AGYAGYDEAL VPRFDVAKAK KLMEEAGYSK DKPLQISMMA
PNNRYVKDAQ IAQATAGMLA KIYINVDLKT LPKAQYWPEF DVCASDMMMI GWHSDTEDSA
NFSEFLMMTR DADAGKGAYN CGNYSNPEVD RLVNAANAET DPAKRATMLQ KVEQILYKDA
AFVPLHWQNL AWGSKSNLQI EPIVNSMNFP YFGDLIVK