Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ping_0509 |
Symbol | |
ID | 4623435 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychromonas ingrahamii 37 |
Kingdom | Bacteria |
Replicon accession | NC_008709 |
Strand | - |
Start bp | 646514 |
End bp | 648457 |
Gene Length | 1944 bp |
Protein Length | 647 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 639795706 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
Protein accession | YP_941963 |
Protein GI | 119944283 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.171501 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGATCGTAG TGTTTTTAAA ATTGCGAACA TCTTGCAACA TTGCATTTAA GAACATAACC ACATTAGTGA GTGCTACCGT GAAAATTAAA GAAAGGTTTA ATATTTTGAA TTTAGACGCT AATGAAAAAC TGCTCTTTCA AAGTGAAGAA AAAGAAAAGC TGGCCGCTGA GTTAATCATT GCCGAGGAAG AAAAAGAAAA GCTGGCTGCC GAGTTAGTCA TTGCCAAGGA AGAAAAAGAA AAACTGGCTG CCGAATTAGT CATTGCTCTT GAATTTCGTA TTGCCGCCAC TGCCTTTGAA TCTCAAGAAG GCATGTTTAT CACCGATGCT AATAACCGTA TTCTTCGCGT GAATAAGGCC TATATCAGAA TTTCAGGCTA CAGTGCAGAA GAAGTTATTG GACAAAAACC TAAGCTATTT AGCTCTGGCC GGCAAGAAAA AGTGTTCTAT AAGGCGATGT GGGACAGTAT CAACAGCACC GACGCATGGG AAGGTGAGAT ATGGAATAGC CGCAAAAATG GTGATATCTA TCCTGGACAT ATGACTATTA CTGCAGTGAA AGATACCAAC GGGATGGTCT CTAATTATGT CGCTATGATC ATAGATATTA CGTTAGACAA AGCTGCCTCG GAAGAAATCA ATAACCTCGC CTACTTTGAT CCGCTCACTA AGTTGCCAAA CCGCCGTCTA TTGCTTGATG AACTTAATCT TGCCCTCACT ATTAATGCGC GCACTCATCA GTATGGTGCA TTACTGTTTA TTGATTTAGA CCACCTTAAA ACCCTCAATA ATACCCGTGG CCACGATGTG GGAAATTTAT TATTAAAACA AGTAACCACC CGCTTAACTG AAAGTGTTAG AGAAGGTGAT ACCATCGCTC GATTGGGCTG TAATGAGTTT GTGGTGGTGT TAGAAAACCT CAGCCCACAA GCAATTAAAG CTACTGCACA AACCAAACAG ATGGCCAAAA AAATCCTCTT TACACTGACT CAACCCTACT CACTCAATGC GATCAAGTAT CACTGCACCC TCAGTATCGG CGCGACAATT TTCAATGGGC ATGAATTGGG ATCAGAGGAG CTGTTAAAGC AAGCGGATAT TGCTATGTAT CAATCCAAGG ACGCAGGGCG TAACAGCCTT TGTTTCTTTA ATCAAACAAT GCTGGAAGCT ATTACTATCC GTGCAGAGAT GGAAAATGAA CTGCACAAAG CGATTAAACA AAATCAATTC CAACTATATT ATCAAATACA GGTTAACGGC TCTGGTCAAG CATTAGGAGC TGAAGCCTTA ATCCGCTGGC AACATCCAGA ACGTGGTCAG ATTTCACCCT TTAACTTTAT TCCTTTAGCC GAAGAAACAG GGCTTATTTT ACCGATAGGG CAATGGGTAT TAGATACCGC CTGTGCTCAA CTTAAAAAAT GGCAACAGAA CCCACTGACA CAAGACCTTG TACTCGCCGT TAATGTCAGT GCGAAACAAT TTCATCAAGA AGACTTTATA GAACAAGTCA AAACCACTCT GCAACGTCAT CAGATTATCC CTGACCGACT AAAGCTAGAA CTAACCGAAA GTATGTTGGT GGAAAATATT AGCGATATCA TTATCAAAAT GAATACGCTC AGAAAAATAG GTATTTTATT CTCATTAGAC GACTTTGGCA CTGGTTATTC TTCTTTACAA TATCTAAAAA GATTGCCCAT CAATCAATTA AAAATAGACC AGTCATTTGT GCGTGACCTT ATTACGGATG CCCATGACAG AATAATTGTA CGCACTATCA TTGCCATGTC ACATAGCTTA GGTATCGACG TTATTGCCGA GGGTGTCGAG ACAGTAGAAG AAAAACAATT CCTGTTGAAT AAAGGCTGTA CCCATTATCA AGGTTATTTA TTTAGCAAAC CCGTGCCAAT TGATGAGTTT GAGGCGTTGC TTAAGTCGGG CTGA
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Protein sequence | MIVVFLKLRT SCNIAFKNIT TLVSATVKIK ERFNILNLDA NEKLLFQSEE KEKLAAELII AEEEKEKLAA ELVIAKEEKE KLAAELVIAL EFRIAATAFE SQEGMFITDA NNRILRVNKA YIRISGYSAE EVIGQKPKLF SSGRQEKVFY KAMWDSINST DAWEGEIWNS RKNGDIYPGH MTITAVKDTN GMVSNYVAMI IDITLDKAAS EEINNLAYFD PLTKLPNRRL LLDELNLALT INARTHQYGA LLFIDLDHLK TLNNTRGHDV GNLLLKQVTT RLTESVREGD TIARLGCNEF VVVLENLSPQ AIKATAQTKQ MAKKILFTLT QPYSLNAIKY HCTLSIGATI FNGHELGSEE LLKQADIAMY QSKDAGRNSL CFFNQTMLEA ITIRAEMENE LHKAIKQNQF QLYYQIQVNG SGQALGAEAL IRWQHPERGQ ISPFNFIPLA EETGLILPIG QWVLDTACAQ LKKWQQNPLT QDLVLAVNVS AKQFHQEDFI EQVKTTLQRH QIIPDRLKLE LTESMLVENI SDIIIKMNTL RKIGILFSLD DFGTGYSSLQ YLKRLPINQL KIDQSFVRDL ITDAHDRIIV RTIIAMSHSL GIDVIAEGVE TVEEKQFLLN KGCTHYQGYL FSKPVPIDEF EALLKSG
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