| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0385 |
|---|
| Symbol | tbpA |
|---|
| ID | 4624191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 490823 |
|---|
| End bp | 491821 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 639795581 |
|---|
| Product | thiamine transporter substrate binding subunit |
|---|
| Protein accession | YP_941845 |
|---|
| Protein GI | 119944165 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4143] ABC-type thiamine transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily
[TIGR01276] thiamine ABC transporter, periplasmic binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0796265 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCGCA TAGTGAAAAA AATCATTCCT TTAATGGCCT TTTCTGTCAT TATTTCAATG
CCGGTATTGG CTGATAAACT GGTCGTTTAT ACCTATGATT CGTTTGCTTC AGATTGGGGA
CCCGGCCCTA AAATTAAACA GGCCTTCGAA AAAAACTGCG CTTGCAGTCT GGAATTTGTT
GCCTTGGACG ATGGTGTTTC AATTTTAAAT CGATTGCGTT TAGAAGGGAA AAACACTAAA
GCCGATATAT TGCTGGGCCT CGACAATAAT TTAATGACTG AAGCCAAAAA GACGGGGTTA
TTAGCAAAGC ACAAGGTTGA TACGAGTAAT GTGATCCTTG CCAATGGTTG GTCAGATAAT
ACCTTTGTGC CGTTTGATTA TGGTTATTTT TCCTTTGTTT ATAATAAAGA AACCCTGTTA
AATCCTCCTG CAAGCCTGAA AGAATTAATT GAGCAACGTC AAGATATTAA CGTTATCTAC
CAGGATCCCC GGACTTCGAC GCCAGGACTG GGGTTAATGT TATGGATAAA ATGGGTTTAT
GGTGATCAAG CCGATGACGC ATGGAAAAAG CTGGCGAAAA AGACCGTGAC AGTCACTAAA
GGTTGGTCTG AAGCTTATAG TATGTTCTTA AAAGGGGAGG CTGATATGGT ACTTTCTTAT
TCAACCTCCC CCGCTTATCA TATTATTGCT GAAGGGAAAA ATCAGTATGC TGCAGCCAAT
TTCTCTGAAG GTCATTACAC GCAAGTGGAA GTTGCCGCAA AAGTTAAAAG CAGTAAAAAT
GAAAAACTTG CAGATAAGTT TATGGCATTT ATTGTCAGTG ATGAATTCCA ATCACTGATG
CCGACCGGGA ACTGGATGTA TCCGGTTACT GATGTCGCGC TTCCTGAAGG GTTTAAAAAT
TTAACCATAC CCTCAACGTC TTTTTCATTC AGCGCAGATA AGGTCGACAA TAATAGAAAA
GTATGGATAA GAGAGTGGCA GAGCTCTTTA ATTTATTAA
|
|---|
| Protein sequence | MERIVKKIIP LMAFSVIISM PVLADKLVVY TYDSFASDWG PGPKIKQAFE KNCACSLEFV
ALDDGVSILN RLRLEGKNTK ADILLGLDNN LMTEAKKTGL LAKHKVDTSN VILANGWSDN
TFVPFDYGYF SFVYNKETLL NPPASLKELI EQRQDINVIY QDPRTSTPGL GLMLWIKWVY
GDQADDAWKK LAKKTVTVTK GWSEAYSMFL KGEADMVLSY STSPAYHIIA EGKNQYAAAN
FSEGHYTQVE VAAKVKSSKN EKLADKFMAF IVSDEFQSLM PTGNWMYPVT DVALPEGFKN
LTIPSTSFSF SADKVDNNRK VWIREWQSSL IY
|
|---|
| |