Gene Ping_0310 details

Gene Information

• Locus tag: Ping_0310
• Symbol: rpoD
• ID: 4624888
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Psychromonas ingrahamii 37
• Kingdom: Bacteria
• Replicon accession: NC_008709
• Strand: -
• Start bp: 409447
• End bp: 411300
• Gene Length: 1854 bp
• Protein Length: 617 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 639795508
• Product: RNA polymerase sigma-70 factor RpoD
• Protein accession: YP_941775
• Protein GI: 119944095
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.744549
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCTCAAA CACCTCAATC ACAGCTCAAA GAGCTTATTA TCAAAGGTAA AGAAAAAGGG 
TTTTTGACCT ACGCAGAAGT TAATGACCAC CTGCCGCAAG ATATCGTTGA ATCTGAGCAG 
ATTGAAGATA TTATTCAAAT GATCGGTGAC ATGGGTATCC GTGTGGTAGA AACGGCTCCG 
GATGCTGATG ATATGTTGAT CGGTGCTGAT GATAGCGAAA CTCCTGATGA GGACGCGGTA 
GAAGCTGCTG CTCAGGTGTT AGCAACGGTT GAATCTGAGA TTGGTAGGAC AACGGATCCG 
GTGCGTATGT ATATGCGCGA AATGGGGACG GTTGAACTAC TAACACGCGA AGGCGAAATT 
GTTATCGCTA AACGTATCGA AGAAGGTATC AAAGAGGTAC AAACTGCTGT TTCTGAATAT 
CCTGCAACAA TCTCAGGACT ATTAGATAAC TGGGACAGCT ACGAAGCTGA AGAAATGAAA 
TTAACTGATT TAATCAGTGG CTTTGTGGAT CCCAATGATG ACATGACACA GGCGGTCAGC 
GCTACGCATA TCGGATCTGA GTTAAGTAAA AAGCAATTAG AAGATGAAGA TAAAGCGGAT 
AAAGATGATT CCGATGAAGA TGATGAAGAA GAAGGACCTA AAGGCCCCGA TCCTGAAGAA 
GCGGCTGAAA AATTTGCCGA ACTTCGTAAA TTAAATCAAG TTGTTGAAGA TTCCATCACT 
AAAAATGGCC GTGCTCATGC AGAGACACGC GCAGCCATTA ATGAGCAGGC AGAGTTTTTC 
CAACAGTTCA AATTAATCCC TAAACAATTT GACCGTATGG TAAAAGCAAT TCGCTTTGCA 
ATGAACGCTG TTCGTGTACA GGAACGTTTA GCATTAAAGA TTTGTGTTGA ACAATGTAAA 
ATGCCTAAAA AAGAGTTTAT TAAGCTGTTT AAAGGCAACG AAACAAATCC TGCGTGGTTA 
GAAGTTATTC TTTCAAATGG CACTGATTAT GCAACCCGGA TCAGTGAATT TGAAGAAGAC 
TTAAGACGCT GTTTAAGAAA AATGTTAGCA GTGGAAGTAC AAAGTGTATT AACCATTACG 
AATATGAAAG GTATCTCTCG CAACATGAGC ATTGGTGAAG CCAAAGCACG TCGAGCAAAA 
AAAGAGATGG TAGAAGCAAA CTTACGTCTG GTTATCTCTA TCGCCAAAAA ATATACTAAC 
CGTGGCTTAC AGTTCCTCGA TTTAATTCAG GAAGGTAATA TCGGATTAAT GAAAGCGGTA 
GATAAATTTG AATACCGCCG GGGTTACAAA TTTTCAACCT ATGCAACTTG GTGGATCCGT 
CAGGCTATTA CCCGCTCGAT TGCAGATCAG GCGCGTACTA TCCGTATTCC GGTACATATG 
ATTGAGACCA TTAATAAACT TAACCGTGTC TCTCGCCAAA TGTTACAGGA AATGGGCCGT 
GAACCACAGC CGGAAGAGCT GGCTGAACGT ATGATGATGC CGGAAGATAA AGTCCGTAAG 
GTATTAAAAA TTGCGAAAGA GCCAATCTCA ATGGAAACAC CTATTGGTGA TGATGAAGAC 
TCTCATTTAG GCGATTTTAT TGAAGATACA ACGATTGCGC TGCCAGCTAA CTGTGCGACA 
AGTGAAAGCC TTAAAAATGC AACTAACGAT GTATTGGAAG GCTTAACAGC ACGTGAAGCG 
AAAGTATTGC GTATGCGTTT TGGTATTGAC ATGAATACCG ATCATACTCT TGAAGAAGTT 
GGGAAGCAGT TTGATGTGAC ACGTGAGCGT ATCCGTCAAA TTGAAGCGAA AGCATTGCGC 
AAACTTCGTC ACCCAAGCCG CAGTGAACAA CTGCGTAGTT TCCTGGATGA ATAA 

 

Protein sequence

MAQTPQSQLK ELIIKGKEKG FLTYAEVNDH LPQDIVESEQ IEDIIQMIGD MGIRVVETAP 
DADDMLIGAD DSETPDEDAV EAAAQVLATV ESEIGRTTDP VRMYMREMGT VELLTREGEI 
VIAKRIEEGI KEVQTAVSEY PATISGLLDN WDSYEAEEMK LTDLISGFVD PNDDMTQAVS 
ATHIGSELSK KQLEDEDKAD KDDSDEDDEE EGPKGPDPEE AAEKFAELRK LNQVVEDSIT 
KNGRAHAETR AAINEQAEFF QQFKLIPKQF DRMVKAIRFA MNAVRVQERL ALKICVEQCK 
MPKKEFIKLF KGNETNPAWL EVILSNGTDY ATRISEFEED LRRCLRKMLA VEVQSVLTIT 
NMKGISRNMS IGEAKARRAK KEMVEANLRL VISIAKKYTN RGLQFLDLIQ EGNIGLMKAV 
DKFEYRRGYK FSTYATWWIR QAITRSIADQ ARTIRIPVHM IETINKLNRV SRQMLQEMGR 
EPQPEELAER MMMPEDKVRK VLKIAKEPIS METPIGDDED SHLGDFIEDT TIALPANCAT 
SESLKNATND VLEGLTAREA KVLRMRFGID MNTDHTLEEV GKQFDVTRER IRQIEAKALR 
KLRHPSRSEQ LRSFLDE