| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0162 |
|---|
| Symbol | |
|---|
| ID | 4626292 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | + |
|---|
| Start bp | 211679 |
|---|
| End bp | 213748 |
|---|
| Gene Length | 2070 bp |
|---|
| Protein Length | 689 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 639795352 |
|---|
| Product | type IV pilus secretin PilQ |
|---|
| Protein accession | YP_941629 |
|---|
| Protein GI | 119943949 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4796] Type II secretory pathway, component HofQ |
|---|
| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAT CATATTTAAA AACATTATTT AATATTTTTC CGCTGGTATT CTTGCTTTAT
TCCCCTATTG GATCGGCTGA ATCACAACTT GGTAAGCTCG ATATTAATCC TCTAGTGGAC
GGTAAATTTG AATTGAGGTT TGGATTCAAC GAATCTATTA GTGGCTACCA AGATAAATTA
TATTATCGCC CGAACAAGTT AGTTATTGAT ATTAAAGACG CGAGTTCCGT TTTAGCGCTA
AACCCGATTA AAATTGAAAA AGGGGGGATT AATAATGTTG CAACCAAGAG GACAGAAGAG
GGGTTGCGTT TAACTATTAC CCTTGACACT TTAATGCCCT ATCGTGTTGT ACAGGAAAAT
AGTCTTCTTT TTGTGCGTTT TGGTCATACC GGGGCTGATA TCGCCGGGAG CGATAAACAG
GAGCTTGCTC TGGCGTCCGC AGTTGTGCAA AATTCTGGCA GCCAAACAAC AAAAACTGCA
ACGGAAAAGG TTAATGCATC AGCTCTATCC TCCAATCAGA CAACCCCTAA GGGTTACGTT
AACAGTATTC ATTCACTTGA CTTTAAGCGT GGCTTAGAGG GACAAGGCAA ATTATTAGTG
TACCTTGATA ACTCCAGTAT AGCTGTCGAC ATTCGTCGTC GTAATAATCA GTTGATCGCT
GAATTTCAGA GTACTTATAT ACCCGACGAA TTATTATATA TTATGGACGT TGTTGATTTT
GCGACTGCAG TAGAAAAAGT GGAAACCTTT AAAGAAGATG GGAAAACGCG CCTTATTTTT
GATATTAAAG ATCAATACAA CTATCGTTAT GACCAGTTAG ATACCCTGTT TATGATTGAA
ATCTCTGAAA AACTTCAAGA TCAAAAAGAA AGTGCCTATC AGGGAAAAGC CATCTCTTTA
AACTTTCAGG ATATCCCGGT GCGCACTGTG TTGCAGTTGA TAGCGGATTT TAATGGTTTT
AATTTAGTCA TTACTGATTC CGTCAGTGGG AATATAACCT TGCGGCTTGA TGATGTGCCC
TGGGAACAGG CCCTGGACAT TATTTTAAAA GTTAAAGGAC TTGGCAAGAG TCTGGACGGT
AACGTATTAA TGATTGCTCC TGCTGTCGAG TTAGCCGCAA AAAAACGCGA GCAGTTAGAA
TCAGAAAATG CTGTGGCTAA TTTAGCGCCT CTGTATTCTG AATTTATCCA AGTCAATTAT
GCTAAAGTAG CTGATATCTC TGCTATGTTA TCGAGTGATA AAACCAGCTT ATTGTCTGAA
CGTGGTGCTG TTAGTGTTGA TAACCGTACT AATACCTTGT TAGTAAAAGA TACTGCAGCT
GTGATTGATG CGGTGAAAAA GATGATTCAA ATATTGGATA TACCGGTTCG CCAGGTGGTG
ATAGAAGCGC GTATGGTCAC TGTTGATGAC TCGGTGAGTG AAGAGTTAGG TGTCAAATGG
GGTATGACGT CAACAAGTAG TAGTACGGTT GATAGTTTAA ATGTTAATCT TCCTGCTACC
GATGCTGCTG GTACTATTGC CTTTAAGCTC GCGAAATTTT CTAATGGTGA TATCTTAGAT
TTAGAGCTTT CTGCATTGGA AAGCGAGAAT AAAGCTGAAA TTATTGCCAG TCCGCGGATC
ACCACGGCGA ATCAGCAAAC CGCCTATATC GAACAGGGTA CAGAGATTCC TTATGTCGAG
TCCGCTTCAT CCGGAGCAAC CTCCGTGGCT TTCAAAAAAG CAGTATTAAG TCTTACGGTG
ACACCACAAA TTACACCCGA TAACAAGGTG ATCTTAGATT TGGAGATCAC CCAAGATACC
GTGGGTGAGA CAGTTTCAGC CGGTACTGGT GAAGCTGTTG CTATTGATAC GCAGAAAATT
GGTACTCAGG TCTTAGTTGG TAACGGCGAA ACATTGGTTT TAGGGGGTAT TTATCAACAA
CGGAACTCAA TAGCTGTGAG TAAAGTGCCT CTTCTGGGAG ATATCCCTTA TTTAGGTGCC
TTATTTAGAT CGACTAATGA GGAAAACACT AAGTCCGAGT TGTTGATTTT TGTCACACCA
AGAATAGTCA TGCAAACTAA ATTCCGATAA
|
|---|
| Protein sequence | MNTSYLKTLF NIFPLVFLLY SPIGSAESQL GKLDINPLVD GKFELRFGFN ESISGYQDKL
YYRPNKLVID IKDASSVLAL NPIKIEKGGI NNVATKRTEE GLRLTITLDT LMPYRVVQEN
SLLFVRFGHT GADIAGSDKQ ELALASAVVQ NSGSQTTKTA TEKVNASALS SNQTTPKGYV
NSIHSLDFKR GLEGQGKLLV YLDNSSIAVD IRRRNNQLIA EFQSTYIPDE LLYIMDVVDF
ATAVEKVETF KEDGKTRLIF DIKDQYNYRY DQLDTLFMIE ISEKLQDQKE SAYQGKAISL
NFQDIPVRTV LQLIADFNGF NLVITDSVSG NITLRLDDVP WEQALDIILK VKGLGKSLDG
NVLMIAPAVE LAAKKREQLE SENAVANLAP LYSEFIQVNY AKVADISAML SSDKTSLLSE
RGAVSVDNRT NTLLVKDTAA VIDAVKKMIQ ILDIPVRQVV IEARMVTVDD SVSEELGVKW
GMTSTSSSTV DSLNVNLPAT DAAGTIAFKL AKFSNGDILD LELSALESEN KAEIIASPRI
TTANQQTAYI EQGTEIPYVE SASSGATSVA FKKAVLSLTV TPQITPDNKV ILDLEITQDT
VGETVSAGTG EAVAIDTQKI GTQVLVGNGE TLVLGGIYQQ RNSIAVSKVP LLGDIPYLGA
LFRSTNEENT KSELLIFVTP RIVMQTKFR
|
|---|
| |