Gene Ping_0142 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_0142 
Symbol 
ID4626347 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp187432 
End bp189051 
Gene Length1620 bp 
Protein Length539 aa 
Translation table11 
GC content39% 
IMG OID639795334 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_941611 
Protein GI119943931 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTGCACT TCTATGTTGA ACAAGGGTTT ACTCGCATTT CAGGCTACAG TGCAGAAGAG 
GTTATTGGAC AGACACCCAA GCTCTTTAGC TCAGGCCGAC AAGACAAAGT GCTCTATAAG
GCGATGTGGA ACAGTATCAA TACCACCGAC GCATGGGAAG GTGAAATCTG GAATCGCCGC
AAAAACGGTG ACACCTATTT AGCGCATATG ACTATTGCCT CAGTGAGAGA CACGGGCAAG
ATGATCTCTA ATTATGTTGC TACGATCACC GATATTACCC TAAACAAAGC CGCCTCAGAA
AAAATCAATA ACCTCGCCTA CTTTGATCAA ATCACTCAGT TACCAAATCG TCTTTTGTTA
GTTGATAGGC TTAATCTCGC CCTAGCTGAA AGTGCGCACA GTAACCATCA TGGTGCATTA
CTATTTATTG ATTTAAACCA GCTTAAAATC ATCAACAACA CCCACGGGTA CAGTGTGGGA
AATTTACTGT TAAAAGAAGT AACTGCTCGC TTAACTCAGA TTGTAAGAAA AGCTGATACC
ATCGCCCGAT TAAGCGGTGA TGAGTTTGTA ATACTTTTAG AAAAATTGAG TGAGCGAGAC
ATTGAAGCTA ACACCGAAAT CCAAAATATT GCTAAAAAAA TTATTTTTTT ATTAACTCAA
CCTTACCAGC TCAATATGCA CAAATATCGT GGCACCATCA GTATCGGCGC AACAATATTC
AATGGGAATG AATTTGCATC GGAAAAACTG TTAAAGCAAG CTGATATTGC TATGCATCAA
TCTAGGCTCG CAGGGCACAA TCGCCTTTGT TTCTTTAATC AAACAATGCA AGAGGCTATT
ACAGCCCGTG CCGAGATGGA ACATGAACTA CGCGAAGCGA TTGAACACAA TCAATTTCAG
CTATATTATC AAATACAGGT TAGCAGTTCT GGTCAAGCAT TAGGGGCTGA AGCTTTAATC
CGTTGGCAAC ATCCAGAAGA TGGTTATATT TCCCCCTTTA ACTTTATCCC TTTAGCCGAA
GAAACAGGAC TTATTTTACC AATAGGGGAA TGGGTATTAA ACACAGCCTG CGCTCAACTT
AAAAAATGGC AAAAAAAACC ACTGACACAA GATCTTGTAC TCGCCGTTAA TGTAAGTGCT
CTACAAATTC ATCAAGAAGA CTTTGTAGAG CAACTAAAAA GCATCCTGCA AAAGCATGAA
ATCACCCCTG AACGACTTAA ACTAGAACTA ACTGAAAGTA TGTTGGTAGA AAATGTCAGT
GGCATTATTA CCAAAATTAA TACACTGAGA AAAATAGGTG TTTTATTCTC ATTAGATGAC
TTTGGTACGG GTTATTCTTC TTTACAATAT CTTAAAAAAT TGCCCATCAA TCAATTAAAA
ATAGACCAGT CATTTGTGCG TGACCTTCTC ACGGATACCA ATGACAGAGC GATTGTACGC
ACCATCATTA CCATGTCACA TAATTTAGGT ATTAACGTTA TTGCCGAGGG TGTAGAAACG
GTAGAACAAA GACAATACTT GTTGAGTGAA GGCTGTATGA ATTATCAAGG CTATCTATTT
AGTAAGCCCG TACCAATTGA TGAGTTTGAA GCGTTGATTT TTCGTTTAAG TGACACCTAA
 
Protein sequence
MVHFYVEQGF TRISGYSAEE VIGQTPKLFS SGRQDKVLYK AMWNSINTTD AWEGEIWNRR 
KNGDTYLAHM TIASVRDTGK MISNYVATIT DITLNKAASE KINNLAYFDQ ITQLPNRLLL
VDRLNLALAE SAHSNHHGAL LFIDLNQLKI INNTHGYSVG NLLLKEVTAR LTQIVRKADT
IARLSGDEFV ILLEKLSERD IEANTEIQNI AKKIIFLLTQ PYQLNMHKYR GTISIGATIF
NGNEFASEKL LKQADIAMHQ SRLAGHNRLC FFNQTMQEAI TARAEMEHEL REAIEHNQFQ
LYYQIQVSSS GQALGAEALI RWQHPEDGYI SPFNFIPLAE ETGLILPIGE WVLNTACAQL
KKWQKKPLTQ DLVLAVNVSA LQIHQEDFVE QLKSILQKHE ITPERLKLEL TESMLVENVS
GIITKINTLR KIGVLFSLDD FGTGYSSLQY LKKLPINQLK IDQSFVRDLL TDTNDRAIVR
TIITMSHNLG INVIAEGVET VEQRQYLLSE GCMNYQGYLF SKPVPIDEFE ALIFRLSDT