| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0065 |
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| Symbol | rpoE |
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| ID | 4624462 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | + |
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| Start bp | 88101 |
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| End bp | 88682 |
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| Gene Length | 582 bp |
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| Protein Length | 193 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 639795257 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_941538 |
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| Protein GI | 119943858 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0245104 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.695831 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTGAGC GAGATTTAGA TTTACAACTG GTTCGGCGTA TTCAGAACGG GGATCAAGTT
GCTTTTACAT TGTTAGTTAG AAAATACCAA ACTCGAGTTG CAAATATTTT AACGCGTTAT
GTGCGCAATA CTGGCGATAT TGCAGACGTA GCACAAGAGG TATTTATCAA AGTGCACAAC
TCCCTCCCCT CTTTTCGTGG AGAGAGTGCC TTTTATACCT GGCTATATAG AATTACCGTT
AATACAGCCA AAAATTATTT AACAAGTCAA AGCCGTCGAC CGCCAGCATC TGATATCGAT
GCAATGGAGG CTGATAGTTT TGATGGTAGT GATGCGTTAA GGGAAGTTGA CAGTCCTGAG
GGAATATTAA GATCTCAGGA AGTAAAGAAA GTAATCTTAA CAACTATTAA TGAATTACCC
TCAGAACTAA AAGCTGCGAT TACGTTTAGG GAAATTGAGG GTATGAGTTA TGAGCAAATA
GCAATTATCG AAGATTGTCC TATCGGCACA GTTCGATCTC GTATTTTTAG AGCTCGTGAA
ATGATAGATA AGCATCTGAA ACCTCTATTA GCAGAAGATT AA
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| Protein sequence | MSERDLDLQL VRRIQNGDQV AFTLLVRKYQ TRVANILTRY VRNTGDIADV AQEVFIKVHN
SLPSFRGESA FYTWLYRITV NTAKNYLTSQ SRRPPASDID AMEADSFDGS DALREVDSPE
GILRSQEVKK VILTTINELP SELKAAITFR EIEGMSYEQI AIIEDCPIGT VRSRIFRARE
MIDKHLKPLL AED
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