Gene Ping_0056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_0056 
Symbol 
ID4624453 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp77684 
End bp78361 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content42% 
IMG OID639795248 
ProductDNA repair protein RadC 
Protein accessionYP_941529 
Protein GI119943849 
COG category[L] Replication, recombination and repair 
COG ID[COG2003] DNA repair proteins 
TIGRFAM ID[TIGR00608] DNA repair protein radc 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.183755 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0623388 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAAAT TAAAAGACTG GCCCAATCAG GAAAGACCGA GAGAAAAATT GCTGCAAAAA 
GGCACAGCGG CCCTTTCTGA TGCTGAACTG CTTGCTATAT TTTTACGTAC GGGTTGCCGT
GGTGTCGACG TCGTCACACT CTCCAAACAA CTGCTAAGTC AATTCGGCTC CTTACATGCT
TTATTTGCTG CATCAGAATC AGATTTTTGT GAAAAAAAAG GGCTAGGACA GGCAAAATAT
GTGCAATTAC AGGCCGTCCT TGAAATGTCC AGCCGCTATT TACAAGAACC CTTAAGTAAA
GGTAACGCCT TAACCAGCGC CGCACAAACT AAAGCCTTCT TAATCGCTAA AATGCACAAT
TTACCCTACG AGGTATTTGC GGCCATATTA TTAGACACAC AACATCGTAT TATTCGCTTT
CATGAGTTTT TCTTTGGTTC AATCGACTGC GCAACAGTCC ACCCTCGAAT CATTGCGCAA
AAAGTATTAT CTGAAAATGC CGCGGCAATT ATACTGGTCC ATAATCATCC TTCCGGCGAT
CCGTCAGCAA GCGAAGCGGA CAAAATGATC ACCCAAAAAA TCGTTTCTGC ACTGCAATTA
ATAGACGTCC GAGTTTTAGA TCATTTGGTC GTTGGGCACA AAAAATGTAC ATCATTTGCA
GAAAATGGAT GGATTTAA
 
Protein sequence
MTKLKDWPNQ ERPREKLLQK GTAALSDAEL LAIFLRTGCR GVDVVTLSKQ LLSQFGSLHA 
LFAASESDFC EKKGLGQAKY VQLQAVLEMS SRYLQEPLSK GNALTSAAQT KAFLIAKMHN
LPYEVFAAIL LDTQHRIIRF HEFFFGSIDC ATVHPRIIAQ KVLSENAAAI ILVHNHPSGD
PSASEADKMI TQKIVSALQL IDVRVLDHLV VGHKKCTSFA ENGWI