Gene Ping_0045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_0045 
Symbol 
ID4623537 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp65289 
End bp66059 
Gene Length771 bp 
Protein Length256 aa 
Translation table11 
GC content40% 
IMG OID639795237 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_941518 
Protein GI119943838 
COG category[R] General function prediction only 
COG ID[COG4221] Short-chain alcohol dehydrogenase of unknown specificity 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00292404 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACACAA AATTAATGCC CACCGTTTTA ATCACCGGAG CAACATCTGG ATTTGGGCTG 
GCAACCGCGA AAAAATTTGC TCAACATGGT TATCCATTAA TTATTACTGG CCGTAGAAAA
GAACGATTGC AGAAGCTCAG CGATCAACTA TCACCAATAA CAGATGTCTT TTTTTATCAG
TTAGATGTAC GTGACAGTGA GGCTATAAAA ACATTTACTC AGGCTATTCC TGATAATTTT
AAGCAGGTAT CAATATTGGT CAATAATGCA GGTCTTGCTT TGGGCACAGA GTCTGCAGAT
AAGGCATCAC TGGATGACTG GCATACAATG ATAGATACCA ATGTCACGGG ACTGGTCAAT
GTGACTCACA GTTTGTTACC TATATTACGT AAACAAGCAT CGGCCAGTAT TATTAACCTT
GCGAGCATAG CAGCTAATTG GTCTTATCCG GGCAGCCATG TTTATGGTGC AAGCAAAGCA
TTTGTGGCAC AATTTTCCAG AAATCTGCGC AGTGACTTTG CCGGGACCGG CGTACGCGTT
ACCAGTTTAG AACCGGGTTT ATCTGAAAGT GAATTTAGCC TGGTAAGGTT TAAAGGGGAT
AAAGAAAAAT ACCAGCAAAT TTATAACAAT GCTGATGCCC TACAACCTGA AGATATCGCT
AATATTATAT TCTGGATAGC AGAGCAGCCT GCTCACATTA ATATTAACAG TATAGAAGTG
ATGCCAACCT CTCAGGCTTG GGATAACTTT AAAATAATTA AGCATCCCTA A
 
Protein sequence
MNTKLMPTVL ITGATSGFGL ATAKKFAQHG YPLIITGRRK ERLQKLSDQL SPITDVFFYQ 
LDVRDSEAIK TFTQAIPDNF KQVSILVNNA GLALGTESAD KASLDDWHTM IDTNVTGLVN
VTHSLLPILR KQASASIINL ASIAANWSYP GSHVYGASKA FVAQFSRNLR SDFAGTGVRV
TSLEPGLSES EFSLVRFKGD KEKYQQIYNN ADALQPEDIA NIIFWIAEQP AHININSIEV
MPTSQAWDNF KIIKHP