Gene Mkms_5490 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMkms_5490 
Symbol 
ID4613174 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMycobacterium sp. KMS 
KingdomBacteria 
Replicon accessionNC_008705 
Strand
Start bp5732942 
End bp5733619 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content72% 
IMG OID639795184 
ProductRNA polymerase sigma factor SigM 
Protein accessionYP_941465 
Protein GI119871513 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.251625 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.202021 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGTGAGCT TCGACGCCGT CGGCCGGTCC GACGCCCAGC TGCTGGCCGA TCATGTCGCG 
GGTGACCGCT ACGCGTTCGC GGAGTTGTTC GTCCGCCACC AGCGCCAGCT CGAGCGGCTC
GCGCGGATCA CCAGCAGCAA CCGCGAGGAC GCCGCCGACG CGCTGCAGGA GGCGATGCTC
TCGGCGCACC GCAAGGCCGC GAGCTTCCGC TTCGACTCCG CGGTGAGCAG CTGGCTGTAC
CGCATCGTCG TCAACGCGTG CCTGGACCGG CTGCGCACCA ACCGCACACA CGCCACCAGC
ACGCTCGTCG ACGACGTCGG ATCGGCCGGC GACCCGACGT CCAGGGTGGA CACCGCGATC
GTCATCGAAC GGGCCCTGCT GCGGTTGCCG GTCGAACAAC GCGCCGCCAT CGTCGCCGTC
GACATGCAGG GGTACTCGGT CGCCGAAACC GCCCGGATGC TGGGCGTCGC GGAAGGCACG
GTCAAGAGTC GGTGCAGCCG GGGCCGGGCG AAACTGGCCG AGACATTGCG CGGTCTCGAC
GAGACGGAGA CGGCATCGCC GCCGCCCGCC GGCCGCGGCT GCCACCCGGT GCCGCGGTCG
GCCCGTAGCC GCCGCCGTCC CACTATCGAG CGCGCCGTGC GTCACGCGGG TGGCGGGACA
CCGGTCGACC GGCCGTAG
 
Protein sequence
MVSFDAVGRS DAQLLADHVA GDRYAFAELF VRHQRQLERL ARITSSNRED AADALQEAML 
SAHRKAASFR FDSAVSSWLY RIVVNACLDR LRTNRTHATS TLVDDVGSAG DPTSRVDTAI
VIERALLRLP VEQRAAIVAV DMQGYSVAET ARMLGVAEGT VKSRCSRGRA KLAETLRGLD
ETETASPPPA GRGCHPVPRS ARSRRRPTIE RAVRHAGGGT PVDRP