| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mkms_5247 |
|---|
| Symbol | |
|---|
| ID | 4612930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium sp. KMS |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008705 |
|---|
| Strand | + |
|---|
| Start bp | 5485406 |
|---|
| End bp | 5486701 |
|---|
| Gene Length | 1296 bp |
|---|
| Protein Length | 431 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 639794944 |
|---|
| Product | putative GAF sensor protein |
|---|
| Protein accession | YP_941226 |
|---|
| Protein GI | 119871274 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCAGGG AAACCGCGAC GACCGTCCCG GATGAACCCG CCGCTCGCAG CCGGGCGCAG
CTCACCGAGG ACGTCGAGAT CGGCCTGGCC GGGACCCTCA ACCTGCGCCG GACCGGTCTG
CGGCTACTCA CCATGCTGCG GCCCGAACTC GCCGACTGGA CGGCGCTCGT CCTGCCCGAC
AACCGCACCG GCGGGGTGAC CTTCTTCGGC GGTGACCAGG TCGGCTTCAC CGACCTCGTG
CCCCGCCGGC CGGAGGCCTA CCCGCTACTG GAGCGGACGC TGCGCACCGG ACAACCACAC
CGCGTCCGGC TCGAGTCGGC CGACGCGGAC CCCGGTGCCC TGGCGGACAT CGTGCACCAT
CCGCGCCTGT GCGACGAGGT GGCCTCCCGC TCCCCCGCCG ACGTCCTGGC GCTCGGCCTG
ACCGCCCGGG GCGCAACGCT GGGCGTGCTG CTGCTCGCGC GCGTCGGCGA CCGGAGCTGG
GGCGGTGATG CCGACAATGA CGACGTGGTG TTCGCGCGGC GTCTCGCGGC GCGGGCGGCG
GTGGCTCTCG ATTCGGCCAG GCTCTACGAA GAGCGCGGCC GGATCGCCGC CGCGCTGCAA
CGGGGTCTGC GGCCCCCGGT GCTGCCGGAG GTCGAGGGCG TGCGGGTGGC CGCCCGCTAC
CGTCCGACGG CCGAGCACCT CGAGATCGGG GGCGACTTCT ACGACGTCCA CGGCGCGGCC
GGCGATTGGC TGTTCGCCCT CGGCGACGTC TGCGGTAAGG GTGTGGAGGC GGCCGCGCTG
ACCGGCCGCA CCCGGCAGAG CATCCGGACC GCCGCGCACT TCGACCGGCG TCCGGAGGTG
GTGCTCGAAG CGCTCAACTC CGTCCTGCAC GAGGCGGAGT CCGATCAGTT CGTCACCGTG
GTGTGCGCCC GGGTGCGGCC GCAGCCGGAC GGCCACGCCG ACGTCGACCT CGCCGTCGCC
GGCCATCCCG CCCCGATCGT GTTGCGGGCC GACGGCCGGG TGGAACAGCT CGAGGTGTTC
GGCACCGCCG CCGGGGTGCG CGCCCAGACG CGTTACCGCC CCGCCTCCGT GCGACTCGAC
CGCGGCGACA CCATGCTGAT GTACACCGAC GGGGTCGACG AGGCACGCGG CGATGCCGGC
TTCTACGGCG TGGACCGGTT GACGGCGTTC CTGCCGGCCT ACGCCGGTGC CGCACCCGAC
GTGGTGTGCG AGGCGGTGGA ACAGGACGTA CTCGAATTCC TCGACGGTCA GCCCCACGAC
GACATCGCGC TGTTGGCGGT GACGTGCGGG ATCTAG
|
|---|
| Protein sequence | MPRETATTVP DEPAARSRAQ LTEDVEIGLA GTLNLRRTGL RLLTMLRPEL ADWTALVLPD
NRTGGVTFFG GDQVGFTDLV PRRPEAYPLL ERTLRTGQPH RVRLESADAD PGALADIVHH
PRLCDEVASR SPADVLALGL TARGATLGVL LLARVGDRSW GGDADNDDVV FARRLAARAA
VALDSARLYE ERGRIAAALQ RGLRPPVLPE VEGVRVAARY RPTAEHLEIG GDFYDVHGAA
GDWLFALGDV CGKGVEAAAL TGRTRQSIRT AAHFDRRPEV VLEALNSVLH EAESDQFVTV
VCARVRPQPD GHADVDLAVA GHPAPIVLRA DGRVEQLEVF GTAAGVRAQT RYRPASVRLD
RGDTMLMYTD GVDEARGDAG FYGVDRLTAF LPAYAGAAPD VVCEAVEQDV LEFLDGQPHD
DIALLAVTCG I
|
|---|
| |