| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_1972 |
|---|
| Symbol | |
|---|
| ID | 4617903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum islandicum DSM 4184 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008701 |
|---|
| Strand | + |
|---|
| Start bp | 1788513 |
|---|
| End bp | 1789631 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639785063 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_931462 |
|---|
| Protein GI | 119873455 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.106436 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.000000141049 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCCC AATGGAAGTT GATAACTATA ACAGGCATAG GCTGGCTCTT CGACGCCATG
GACGTCCTCC TCTTGTCGTA CATACTAGTG GCGTCGGCGG CTGAGCTAGG GATGGGGGTC
TGGGAGAGAT CCGTGGTGGT ACTAGCGAAC AACCTCGGCA TGTTAATCGG CGCAACTGCC
TTTGGGAGAC TGTCAGACAG GCTTGGCAGA AGGGCCGTCT TCACAGCGAC GCTCCTCCTC
TACAGCCTTG CCACGGCTGC CACAGCCTTT GTAAAAACCG GATGGGAGCT TGCAGCTGTG
CGTCTTATCG CCGGGCTGGG CCTAGGCGGC GAACTCCCCG TCGTCGCCTC CTACGTATCT
GAGCTCTCGC CGCCAGACAG GAGGGGGAGA AACGTAGTTA TTCTAGAGAG CTTCTGGTCT
CTCGGCGCGT TGGCGGCAGC CGCCGTGGCG TACTTCCTCT TCCCCCGCCT CGGCTGGAGA
ACCGCCCTGC TCCTCCTCGG CCTCACCGCG TTATACGCCG CGGTGATAAG GGCAACGCTC
CCCGAGCACA AACCCGCGGC CAAGGGGGCT GTCTCTATTG AGACGAGACG GCTCTACCCA
GTGTGGTACA TATGGCTAGT GCTGGCGTTT GGCTACTACG GCGTCTTCCT CTGGCTACCC
ACCATCCTCG TCAGAGAGAG GGGACTAGCC GAGGTGCAGA CCTACCAGTT CATGTTAATT
ACGACAATTG CTCAGATCCC CGGTTACTTC ACCGCCGCTT ACCTCGTGGA AAAAATCGGG
AGGAGACCCA CCGCAGCGAT CTTCTTCCTC GGCTCCGCCG CATCGGCGGC CGCCCTCATA
TACAGCGTTA GCTTGCCCCA GCTTTACATC TCTGCCATCG CGCTGAACTT CTTCAACCTA
GGCGCCTGGG GCGTGGTATA CGCCTACACG CCCGAGCTTT TCCCAGAACA CGTCAGAGGT
TTTGCCACTG GGACCGCCGG CTCTGCCGCA CGGGTGGGGA TGATCCTCGG CCCCTGGCTC
TACCCGGCGG CCGGTCTCTA CGCCCTAGTG GCAGTGCCTC TCCTCTGGCT CACCGTCCCC
GCCGCCGTAT ATACCCTGCC GGAGACCAAG AGACGCTAG
|
|---|
| Protein sequence | MISQWKLITI TGIGWLFDAM DVLLLSYILV ASAAELGMGV WERSVVVLAN NLGMLIGATA
FGRLSDRLGR RAVFTATLLL YSLATAATAF VKTGWELAAV RLIAGLGLGG ELPVVASYVS
ELSPPDRRGR NVVILESFWS LGALAAAAVA YFLFPRLGWR TALLLLGLTA LYAAVIRATL
PEHKPAAKGA VSIETRRLYP VWYIWLVLAF GYYGVFLWLP TILVRERGLA EVQTYQFMLI
TTIAQIPGYF TAAYLVEKIG RRPTAAIFFL GSAASAAALI YSVSLPQLYI SAIALNFFNL
GAWGVVYAYT PELFPEHVRG FATGTAGSAA RVGMILGPWL YPAAGLYALV AVPLLWLTVP
AAVYTLPETK RR
|
|---|
| |