| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_1722 |
|---|
| Symbol | |
|---|
| ID | 4616679 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum islandicum DSM 4184 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008701 |
|---|
| Strand | - |
|---|
| Start bp | 1558952 |
|---|
| End bp | 1559608 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 639784805 |
|---|
| Product | CRISPR-associated Cas4 family protein |
|---|
| Protein accession | YP_931216 |
|---|
| Protein GI | 119873209 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1468] RecB family exonuclease |
|---|
| TIGRFAM ID | [TIGR00372] CRISPR-associated protein Cas4 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.523221 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTGC TACGGCCTAG GCCGATTTGT CGTCTTATAA ATTGTGATGA CTTAGAAAAC
TTAGACGCTG AAGGTGCGTT AGAGGAGTTG AAAAAAGAGC AAGAGATCTT TAGGTTATTT
CCCGATATTT ATGCATATAG GTATGATTTC AAGCGCATAT CGCCCTCTGT TATTAACGAT
TTTGAGTATT GTCCAAGACT ACTATGGGTA CAACATAAAC TAAGGTTGAA ACTATTTACA
AAAGGTTCTG CAGTATCGCT TATTCGTGGA AGATTACTTC ATGAAAGATA CGAAAGAGCT
GTTTCCGTTT TTGACAACGT TATTATAGAA TACAAGGTGG AGATAGGCGA TTTAGTAGGC
GTTATAGATG TCGTAGTTAA GAAAGGCCGT AATCTTATCC CAGTAGAAAT CAAAGCCGGT
ACAGCGACAA GGGAGGCGCA TAGGAGACAA TTACAGATAT ATATACATCT CTTAAATGCA
AAATACGGAT ACTTAGTATA CAGAAACAGA GTAGAAATAG TAGAAAGAGA CGATAATGCT
CTTAAACTTT TAAAGGAAAT AAGACAAATT TTGGAATCGG ATAAACCGCC TGAGAACAAA
AAATGCCATA GTTGCGTTTT CGACATAATA TGTAAGAATA TTTTGGGAGA AATCTAA
|
|---|
| Protein sequence | MELLRPRPIC RLINCDDLEN LDAEGALEEL KKEQEIFRLF PDIYAYRYDF KRISPSVIND
FEYCPRLLWV QHKLRLKLFT KGSAVSLIRG RLLHERYERA VSVFDNVIIE YKVEIGDLVG
VIDVVVKKGR NLIPVEIKAG TATREAHRRQ LQIYIHLLNA KYGYLVYRNR VEIVERDDNA
LKLLKEIRQI LESDKPPENK KCHSCVFDII CKNILGEI
|
|---|
| |